Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 MXRA5Y-201ENST00000420610 8000 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 GPS2P1-201ENST00000411761 986 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A3P12111 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A3P12111 AL445423.1-201ENST00000609941 536 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL6A3P12111 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 ICK-202ENST00000356971 6227 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 CCSER1-209ENST00000509176 5847 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 AC016251.1-201ENST00000624299 4198 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 SNORA84-201ENST00000459229 133 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 AC087672.1-201ENST00000479876 766 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 DSTNP2-201ENST00000504533 515 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 BTF3P13-201ENST00000513224 490 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.03□□□□□ -1.44
COL6A3P12111 AC063977.5-201ENST00000601044 974 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 RPL26P30-202ENST00000602923 645 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 AC119674.1-201ENST00000641611 1210 ntBASIC6.03□□□□□ -1.44
COL6A3P12111 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC6.03□□□□□ -1.44
COL6A3P12111 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.03□□□□□ -1.44
COL6A3P12111 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL6A3P12111 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.02□□□□□ -1.45
COL6A3P12111 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A3P12111 CR383656.1-201ENST00000484916 377 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 IGKV2D-10-201ENST00000520194 281 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 RPA2P3-201ENST00000533268 770 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 BLZF2P-201ENST00000553776 1130 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 TMOD3-201ENST00000308580 8255 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 RBM27-201ENST00000265271 6451 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A3P12111 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL6A3P12111 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL6A3P12111 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 AC009480.2-201ENST00000422916 432 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RPL23AP83-201ENST00000434984 473 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A3P12111 FRG2FP-204ENST00000453982 852 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RN7SL51P-201ENST00000468230 285 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RPL32P33-201ENST00000487023 394 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 OR9L1P-201ENST00000529493 933 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.02□□□□□ -1.45
COL6A3P12111 AC008033.2-201ENST00000542626 177 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 AC110048.2-201ENST00000617013 6721 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RPL32P23-201ENST00000397237 405 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 RPS4XP5-201ENST00000419038 768 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 NPM1P51-201ENST00000443470 744 ntBASIC6.02□□□□□ -1.45
COL6A3P12111 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC6.02□□□□□ -1.45
COL6A3P12111 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
COL6A3P12111 HERC3-201ENST00000264345 4764 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
COL6A3P12111 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL6A3P12111 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 AL157831.2-201ENST00000564681 3095 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 RPRD2-202ENST00000369068 4612 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 CSNK1G1-211ENST00000635142 5548 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms