Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 SPTLC1P2-201ENST00000407089 121 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 RNU4-34P-201ENST00000410431 124 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 BMS1P17-202ENST00000416720 316 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 MIR7155-201ENST00000615925 56 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 AC235565.1-201ENST00000456962 1325 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 AF287957.1-201ENST00000607368 1595 ntBASIC11.78□□□□□ -0.52
SHROOM4Q9ULL8 RBMY1HP-201ENST00000382759 1389 ntBASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 RNU1-49P-201ENST00000363468 159 ntBASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC093270.2-201ENST00000486157 792 ntBASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC092681.3-201ENST00000609463 678 ntBASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC116651.1-201ENST00000609724 556 ntBASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SHROOM4Q9ULL8 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC11.77□□□□□ -0.53
SHROOM4Q9ULL8 CTAGE11P-201ENST00000451540 2353 ntBASIC11.77□□□□□ -0.53
SHROOM4Q9ULL8 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC11.77□□□□□ -0.53
SHROOM4Q9ULL8 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC11.77□□□□□ -0.53
SHROOM4Q9ULL8 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AL136131.3-201ENST00000607600 188 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 MIR375-201ENST00000362103 64 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 U3.7-201ENST00000363668 216 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 RN7SL466P-201ENST00000497546 295 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC091965.3-201ENST00000506236 208 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC021269.1-201ENST00000526860 705 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC044860.2-201ENST00000561005 179 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 RPL12P48-201ENST00000605620 304 ntBASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 CCL14-204ENST00000622526 472 ntTSL 3 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
SHROOM4Q9ULL8 AL591848.4-201ENST00000567832 3472 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 GUCY1B2-204ENST00000531898 1979 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AC119674.1-202ENST00000641333 1860 ntBASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SHROOM4Q9ULL8 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms