Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 VIS1.1-201ENST00000610517 203 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC006840.1-201ENST00000623069 542 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC007490.1-201ENST00000624321 703 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MIR3974-201ENST00000637126 96 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 CASC19-206ENST00000641028 1430 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 CASC19-260ENST00000641828 2001 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 SALL1P1-201ENST00000438101 3837 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 THAP12P7-201ENST00000520248 2290 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC005840.3-201ENST00000541888 1803 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RNU6-225P-201ENST00000384613 103 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 MIR498-201ENST00000385134 124 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 SNORA40.2-201ENST00000390847 128 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RN7SKP137-201ENST00000411074 307 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RN7SKP30-201ENST00000411373 334 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 IGKV1OR2-3-201ENST00000411475 288 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC009413.1-201ENST00000414823 399 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 TRGV6-201ENST00000417928 299 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC239800.1-201ENST00000442049 719 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 FUNDC2P2-202ENST00000443452 493 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RPS7P4-201ENST00000444127 582 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RPS4XP19-201ENST00000460237 736 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RN7SL688P-201ENST00000471754 275 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 OR10J9P-201ENST00000511932 987 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 NDUFB4P12-201ENST00000513465 390 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC023632.1-201ENST00000518463 375 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 GCSHP4-201ENST00000538792 439 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 NIFKP8-201ENST00000560500 874 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AADACP1-206ENST00000561502 1193 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 VN1R88P-201ENST00000596787 292 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 Z99497.2-201ENST00000603634 310 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL392112.1-201ENST00000605115 829 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC010245.2-201ENST00000606908 1167 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 SNORD91A-202ENST00000609620 191 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 PTCHD3P1-201ENST00000612350 537 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AC243725.1-201ENST00000637164 436 ntBASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
TRAIPQ9BWF2 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
TRAIPQ9BWF2 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
TRAIPQ9BWF2 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
TRAIPQ9BWF2 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.11
TRAIPQ9BWF2 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC8.15□□□□□ -1.11
TRAIPQ9BWF2 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC122713.2-201ENST00000624942 3335 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 MTND4P31-201ENST00000425607 1343 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PROS2P-201ENST00000474651 1951 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 SNORA11C-201ENST00000408532 129 ntBASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms