Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC126175.1-201ENST00000617041 758 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 FO681491.1-202ENST00000623392 737 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC078880.4-201ENST00000617627 1749 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL033543.1-201ENST00000623440 13454 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 UGT2B27P-201ENST00000505092 1620 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL139384.2-201ENST00000613809 3590 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC073365.1-203ENST00000641055 1992 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 TATDN2P3-201ENST00000452855 3665 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 PPIAP24-201ENST00000328558 471 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 OR7E25P-201ENST00000344844 931 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 RNA5SP321-201ENST00000362722 111 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC083799.1-201ENST00000366451 910 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 RANP6-201ENST00000413691 644 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 RPL7AP14-201ENST00000424041 802 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 DUTP4-201ENST00000424782 475 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 GTF3AP6-201ENST00000432585 986 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 PFN1P11-201ENST00000445829 389 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 VPS25P1-201ENST00000455691 508 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AK5-208ENST00000478255 556 ntTSL 2 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AP002453.1-201ENST00000492327 668 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 LSM3P4-201ENST00000502948 309 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 SNX18P23-201ENST00000510867 677 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC079905.1-201ENST00000549280 475 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 SYPL1P2-201ENST00000582878 727 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC009303.3-201ENST00000591103 736 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL352984.2-201ENST00000611153 546 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 MIR7854-201ENST00000620068 65 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC024884.1-201ENST00000620583 399 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL035425.4-201ENST00000624509 1063 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AC129915.3-201ENST00000634128 948 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 ZNF806-201ENST00000438300 1774 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 CCAT2-201ENST00000630920 1752 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 AL512329.1-201ENST00000404600 1592 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 MAPK10-379ENST00000642013 1385 ntBASIC6.31□□□□□ -1.4
COL28A1Q2UY09 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.31□□□□□ -1.4
COL28A1Q2UY09 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC007114.2-201ENST00000576014 4281 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC123769.1-201ENST00000530992 3192 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 EIF3EP1-201ENST00000433978 1316 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 SMG1P5-202ENST00000529428 4219 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 SMG1P2-201ENST00000566127 4221 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms