Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC6.43□□□□□ -1.38
MSX2P35548 AP001094.1-201ENST00000579805 193 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 AL161725.1-210ENST00000590240 1224 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 SIGLEC31P-201ENST00000594237 551 ntBASIC6.43□□□□□ -1.38
MSX2P35548 PRR13P5-201ENST00000596581 442 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC6.43□□□□□ -1.38
MSX2P35548 AC021171.1-201ENST00000603137 706 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 IZUMO3-203ENST00000604921 743 ntAPPRIS P2 TSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 OR7M1P-201ENST00000608946 533 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL008582.1-201ENST00000609612 442 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AP005229.2-201ENST00000609980 697 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC027271.1-201ENST00000610270 610 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AL512427.1-201ENST00000618593 349 ntBASIC6.43□□□□□ -1.38
MSX2P35548 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 AC068234.2-201ENST00000619646 522 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC091304.6-201ENST00000619761 202 ntBASIC6.43□□□□□ -1.38
MSX2P35548 uc_338.37-201ENST00000620113 186 ntBASIC6.43□□□□□ -1.38
MSX2P35548 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 AL049536.1-201ENST00000625043 744 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 CASC19-222ENST00000641321 1173 ntBASIC6.43□□□□□ -1.38
MSX2P35548 OR7E161P-202ENST00000641994 1033 ntBASIC6.43□□□□□ -1.38
MSX2P35548 AC006511.3-201ENST00000624929 1783 ntBASIC6.43□□□□□ -1.38
MSX2P35548 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.43□□□□□ -1.38
MSX2P35548 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
MSX2P35548 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC6.43□□□□□ -1.38
MSX2P35548 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 CDY11P-201ENST00000447168 1651 ntBASIC6.42□□□□□ -1.38
MSX2P35548 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 IMMTP1-201ENST00000435590 2219 ntBASIC6.42□□□□□ -1.38
MSX2P35548 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 MAPK10-261ENST00000641050 3109 ntBASIC6.42□□□□□ -1.38
MSX2P35548 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 SPATA45-201ENST00000332912 506 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AC008549.2-201ENST00000333482 706 ntBASIC6.42□□□□□ -1.38
MSX2P35548 RNU4-28P-201ENST00000364739 141 ntBASIC6.42□□□□□ -1.38
MSX2P35548 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 PCOTH-201ENST00000382133 805 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 PCNAP3-201ENST00000397222 778 ntBASIC6.42□□□□□ -1.38
MSX2P35548 GAPDHP15-201ENST00000398586 975 ntBASIC6.42□□□□□ -1.38
MSX2P35548 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AC119751.3-201ENST00000399720 670 ntBASIC6.42□□□□□ -1.38
MSX2P35548 OR4F7P-201ENST00000402444 931 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AL589994.1-201ENST00000404962 340 ntBASIC6.42□□□□□ -1.38
MSX2P35548 OR4F1P-201ENST00000405102 938 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 OR4F2P-201ENST00000424047 938 ntBASIC6.42□□□□□ -1.38
MSX2P35548 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.42□□□□□ -1.38
MSX2P35548 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 MTND1P34-201ENST00000438556 671 ntBASIC6.42□□□□□ -1.38
MSX2P35548 THAP5P1-201ENST00000439089 262 ntBASIC6.42□□□□□ -1.38
MSX2P35548 CRYGGP-201ENST00000443337 145 ntBASIC6.42□□□□□ -1.38
MSX2P35548 LINC02549-201ENST00000445346 674 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 LRRC37A14P-201ENST00000452297 462 ntBASIC6.42□□□□□ -1.38
MSX2P35548 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 RN7SL392P-201ENST00000473024 299 ntBASIC6.42□□□□□ -1.38
MSX2P35548 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 MYL6P4-201ENST00000477911 453 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC135999.1-201ENST00000478962 479 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC090543.1-201ENST00000492168 485 ntBASIC6.42□□□□□ -1.38
MSX2P35548 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
MSX2P35548 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 NPM1P27-201ENST00000502784 830 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.42□□□□□ -1.38
MSX2P35548 CHCHD2P7-201ENST00000508008 452 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AC106774.2-201ENST00000510266 406 ntBASIC6.42□□□□□ -1.38
MSX2P35548 RNA5SP116-201ENST00000516132 98 ntBASIC6.42□□□□□ -1.38
MSX2P35548 SNORA19.3-201ENST00000516165 130 ntBASIC6.42□□□□□ -1.38
MSX2P35548 KCTD9P6-201ENST00000522306 950 ntBASIC6.42□□□□□ -1.38
MSX2P35548 AP000880.1-201ENST00000529416 743 ntTSL 3 BASIC6.42□□□□□ -1.38
MSX2P35548 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC6.42□□□□□ -1.38
MSX2P35548 LDHC-204ENST00000536880 957 ntTSL 5 BASIC6.42□□□□□ -1.38
MSX2P35548 VDAC2P2-201ENST00000544463 901 ntBASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms