Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 HMGB1P20-201ENST00000402555 677 ntBASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 NENFP3-201ENST00000503735 313 ntBASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AC096861.1-201ENST00000616652 240 ntBASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 OR7A1P-202ENST00000641542 1158 ntBASIC9.26□□□□□ -0.93
SCAPERQ9BY12 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 AP000866.6-201ENST00000638898 3579 ntBASIC9.26□□□□□ -0.93
SCAPERQ9BY12 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
SCAPERQ9BY12 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 CLCA3P-203ENST00000490028 2781 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AC062029.1-202ENST00000606164 3651 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 OR11H13P-201ENST00000359695 979 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 RNU4-34P-201ENST00000410431 124 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AL596448.1-201ENST00000415024 392 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AL133445.1-201ENST00000467051 452 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 DCN-209ENST00000546745 1026 ntTSL 3 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 MIR1269B-201ENST00000580405 75 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 MAK-202ENST00000354489 3941 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AC092821.2-201ENST00000545710 2042 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 C4BPAP1-201ENST00000415474 1893 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AC005332.9-201ENST00000620266 2921 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 AL590763.1-201ENST00000398297 1545 ntBASIC9.25□□□□□ -0.93
SCAPERQ9BY12 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SCAPERQ9BY12 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 OR2M1P-201ENST00000318104 951 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 RNA5SP394-201ENST00000364216 119 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 RN7SL826P-201ENST00000479724 288 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 AL390726.5-202ENST00000564800 256 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 GMFG-212ENST00000602185 423 ntTSL 3 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 AC004808.2-201ENST00000627965 773 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 AL132640.3-201ENST00000630473 177 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 GUCY1B2-204ENST00000531898 1979 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 AC007342.5-201ENST00000571340 2142 ntBASIC9.24□□□□□ -0.93
SCAPERQ9BY12 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC9.24□□□□□ -0.93
SCAPERQ9BY12 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 AC016027.4-201ENST00000450866 277 ntBASIC9.23□□□□□ -0.93
SCAPERQ9BY12 RPS23P6-201ENST00000466136 431 ntBASIC9.23□□□□□ -0.93
SCAPERQ9BY12 AC006499.3-201ENST00000506077 748 ntBASIC9.23□□□□□ -0.93
SCAPERQ9BY12 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC9.23□□□□□ -0.93
SCAPERQ9BY12 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC9.23□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms