Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 TRAPPC6B-202ENST00000347691 3229 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 ENSAP3-201ENST00000312710 333 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RNA5SP141-201ENST00000364543 120 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RN7SKP133-201ENST00000364845 340 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RNA5SP88-201ENST00000365560 109 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
HLA-CQ95604 HMGB3P1-201ENST00000393368 573 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 RN7SKP26-201ENST00000410247 293 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 RPL12P27-201ENST00000414870 496 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 FCF1P2-201ENST00000415284 583 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 RPL24P2-201ENST00000421023 475 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL035045.1-201ENST00000425405 632 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC231532.1-201ENST00000438584 312 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RPS10P14-201ENST00000440748 502 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC005002.1-201ENST00000447458 540 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AC007547.2-201ENST00000468802 360 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RN7SL649P-201ENST00000496974 275 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC009646.1-201ENST00000510455 318 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 MINCR-206ENST00000524335 499 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 OSBPL9P2-201ENST00000526582 1228 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC8.42□□□□□ -1.06
HLA-CQ95604 ARL2BPP2-201ENST00000550907 489 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 PSMB7P1-201ENST00000556349 514 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AL589765.5-201ENST00000596133 515 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AL161729.2-201ENST00000605700 456 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AC012488.1-201ENST00000611221 640 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 AL359535.1-201ENST00000612100 1087 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 STMN1P1-201ENST00000617809 440 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AP000648.2-201ENST00000624182 404 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-CQ95604 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 TRIM49-202ENST00000532501 1437 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 MMP13-202ENST00000340273 1470 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 TRIM51-202ENST00000449290 1629 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC073342.2-201ENST00000595842 1800 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 ADAM21P1-201ENST00000529267 2170 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 DCX-210ENST00000637453 2275 ntAPPRIS ALT1 TSL 5 BASIC8.42□□□□□ -1.06
HLA-CQ95604 ADAM2-202ENST00000347580 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 VPS45-202ENST00000369130 2790 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC008522.1-201ENST00000639479 2906 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 DBF4B-201ENST00000315005 2997 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 TRIM52-205ENST00000611618 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 LINC01291-201ENST00000377469 3662 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-CQ95604 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 AC007126.1-201ENST00000508202 4781 ntBASIC8.42□□□□□ -1.06
HLA-CQ95604 RBM18-201ENST00000417201 4974 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-CQ95604 RCBTB1-201ENST00000258646 3816 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 ABCA17P-204ENST00000494925 3478 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 HKR1-202ENST00000392153 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 C20orf197-201ENST00000625080 2732 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 RCAN1-210ENST00000487990 2520 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 SLAMF7-207ENST00000458602 2449 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AC010533.1-201ENST00000624875 2105 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 LSMEM1-201ENST00000312849 1870 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AL451064.2-201ENST00000623514 1654 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 CPEB4-209ENST00000522336 1551 ntTSL 5 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 SLITRK3-202ENST00000475390 4555 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC8.41□□□□□ -1.06
HLA-CQ95604 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-CQ95604 RNU6-877P-201ENST00000383868 107 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 Y_RNA.529-201ENST00000384586 119 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 AC090114.1-201ENST00000393266 448 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 ATP5HP3-201ENST00000396994 486 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 KRT18P52-201ENST00000404956 846 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 HMGB3P18-201ENST00000406327 590 ntBASIC8.41□□□□□ -1.06
HLA-CQ95604 AC009228.1-201ENST00000413254 240 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AL358779.1-201ENST00000415465 400 ntTSL 2 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC8.41□□□□□ -1.06
HLA-CQ95604 AC092647.1-201ENST00000420654 287 ntBASIC8.41□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms