Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 RNA5SP321-201ENST00000362722 111 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 RNA5SP140-201ENST00000364524 92 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AP003170.5-201ENST00000397185 335 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 PRELID1P1-201ENST00000403549 660 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 RPL5P20-201ENST00000403848 896 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 CYCSP52-201ENST00000422857 310 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 TVP23CP1-201ENST00000450317 639 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AC018638.3-201ENST00000461273 132 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AC022206.1-201ENST00000495947 347 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AP000926.3-201ENST00000497201 299 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AC106822.1-201ENST00000502647 526 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC5.63□□□□□ -1.51
LMX1BO60663 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.63□□□□□ -1.51
LMX1BO60663 AL162632.2-201ENST00000553933 399 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC245052.7-201ENST00000601161 359 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC073389.3-201ENST00000609434 935 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.63□□□□□ -1.51
LMX1BO60663 MIR7854-201ENST00000620068 65 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC010325.3-201ENST00000641084 394 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LMX1BO60663 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC5.63□□□□□ -1.51
LMX1BO60663 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 AL662795.2-201ENST00000624252 3706 ntBASIC5.63□□□□□ -1.51
LMX1BO60663 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LMX1BO60663 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.63□□□□□ -1.51
LMX1BO60663 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.62□□□□□ -1.51
LMX1BO60663 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.62□□□□□ -1.51
LMX1BO60663 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.62□□□□□ -1.51
LMX1BO60663 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LMX1BO60663 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
LMX1BO60663 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
LMX1BO60663 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.62□□□□□ -1.51
LMX1BO60663 LINC01616-201ENST00000561816 2280 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.62□□□□□ -1.51
LMX1BO60663 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
LMX1BO60663 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 RN7SKP15-201ENST00000364742 309 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 RNA5SP485-201ENST00000365053 119 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 RPL12P23-201ENST00000405880 490 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LMX1BO60663 RN7SKP129-201ENST00000410288 299 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 CASKP1-201ENST00000412870 582 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 MRPS21P5-201ENST00000417885 231 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.62□□□□□ -1.51
LMX1BO60663 AC007386.1-201ENST00000455212 582 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.62□□□□□ -1.51
LMX1BO60663 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.62□□□□□ -1.51
LMX1BO60663 RN7SL165P-201ENST00000477476 291 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.62□□□□□ -1.51
LMX1BO60663 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LMX1BO60663 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.62□□□□□ -1.51
LMX1BO60663 AC084121.1-201ENST00000533882 835 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.62□□□□□ -1.51
LMX1BO60663 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LMX1BO60663 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.62□□□□□ -1.51
LMX1BO60663 AC091133.5-201ENST00000603088 301 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 MIR6721-201ENST00000617181 87 ntBASIC5.62□□□□□ -1.51
LMX1BO60663 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LMX1BO60663 AL035425.4-201ENST00000624509 1063 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms