Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU6-389P-201ENST00000517048 105 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 RNU6-1137P-201ENST00000517073 99 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 RNU6-988P-201ENST00000519081 107 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 IGHVIII-67-4-201ENST00000524281 296 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 OR6M2P-201ENST00000529831 871 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AP004245.1-201ENST00000530434 259 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AP001372.1-202ENST00000533008 344 ntTSL 3 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 LINC02191-201ENST00000568036 518 ntTSL 4 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 PDE6G-202ENST00000571004 458 ntAPPRIS P1 TSL 3 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AP001496.2-202ENST00000579933 977 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC008649.2-201ENST00000585999 242 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC006504.5-211ENST00000588636 576 ntTSL 4 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 ZNF98-205ENST00000601553 566 ntTSL 3 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC011894.1-201ENST00000603255 456 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC023513.1-201ENST00000604396 691 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC022893.3-201ENST00000607665 437 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 AC006924.1-201ENST00000610750 559 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 FAM238B-204ENST00000612040 423 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 uc_338.23-201ENST00000614169 164 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 Metazoa_SRP.155-201ENST00000616367 282 ntBASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 KRTAP7-1-201ENST00000621162 721 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01320-209ENST00000625995 928 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 KRT7-214ENST00000638501 398 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 TRIM43-201ENST00000272395 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 MR1-205ENST00000434571 7479 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 PRNT-203ENST00000423718 2096 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 GNAI1-205ENST00000457358 1633 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 THBS3-210ENST00000541576 3200 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 KIF23-203ENST00000395392 3357 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 FRMD6-201ENST00000344768 2972 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 HELQ-204ENST00000510985 3315 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 CYP2C18-202ENST00000339022 1471 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 RFX4-202ENST00000357881 2565 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01358-207ENST00000634502 2575 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS9D1Q9Y2B5 NOL4-201ENST00000261592 3957 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 CCNK-201ENST00000389879 3524 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC009053.1-202ENST00000563377 2051 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 PSG3-204ENST00000595140 1724 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 GLULP5-201ENST00000547831 1390 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 TPH2-201ENST00000333850 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 CYP2C8-211ENST00000539050 2024 ntTSL 3 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 LRRC66-201ENST00000343457 3327 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MYO1A-201ENST00000300119 3621 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 ADAM3A-208ENST00000495171 2284 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MIER1-201ENST00000355356 4818 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AP000769.1-204ENST00000309775 800 ntTSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 OR13H1-201ENST00000338616 927 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 Y_RNA.31-201ENST00000362574 102 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 SNORA58.1-201ENST00000364133 136 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 RNA5SP141-201ENST00000364543 120 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 PARD3-204ENST00000374768 799 ntTSL 3 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 RN7SKP139-201ENST00000410411 293 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 MTCYBP10-201ENST00000424905 650 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AL445669.1-201ENST00000426743 755 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 BX890604.2-201ENST00000427883 474 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 PGA5-202ENST00000451616 971 ntTSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AL592043.2-201ENST00000454146 743 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 RPS20P4-201ENST00000461659 355 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 RN7SL449P-201ENST00000464937 286 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC117382.1-201ENST00000468074 730 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 HMGB1P30-201ENST00000492455 606 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC112206.3-201ENST00000514578 389 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC105417.1-201ENST00000514691 285 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 IGKV2D-18-201ENST00000519785 375 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AP003354.1-201ENST00000523791 533 ntTSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 PROSER3-207ENST00000537459 772 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 Metazoa_SRP.11-201ENST00000537819 269 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC005871.2-201ENST00000549104 526 ntTSL 4 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 LINGO1-AS1-202ENST00000558887 1124 ntTSL 2 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AL845331.3-202ENST00000562856 261 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 DYNLL1P1-201ENST00000595442 269 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 SEM1-224ENST00000623693 729 ntTSL 5 BASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 AC129778.1-202ENST00000623812 261 ntBASIC8.63□□□□□ -1.03
VPS9D1Q9Y2B5 LINC01206-219ENST00000625703 820 ntTSL 5 BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms