Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SNORA58-201ENST00000505219 137 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 CTSC-203ENST00000524463 6125 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 ZNF493-201ENST00000339914 1665 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AL121768.1-201ENST00000613917 2544 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC096741.1-201ENST00000472250 846 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 FOXG1-AS1-203ENST00000551395 602 ntTSL 4 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AL953862.2-201ENST00000603089 820 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC087385.3-201ENST00000620477 187 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC091965.3-201ENST00000506236 208 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AP000662.1-201ENST00000530952 487 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 DOCK8-201ENST00000382329 6124 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 AC089998.1-201ENST00000548575 3141 ntBASIC5.82□□□□□ -1.48
VPS13AQ96RL7 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS13AQ96RL7 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC012519.1-201ENST00000424588 610 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AL049745.1-201ENST00000433953 286 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC007537.2-201ENST00000472093 511 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 RN7SL30P-201ENST00000488416 306 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AP000676.2-201ENST00000529711 301 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 TENM2-205ENST00000519204 9427 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 REV3L-202ENST00000368802 10701 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 ARG1-203ENST00000368087 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC132825.3-201ENST00000562182 4710 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC092967.1-201ENST00000449016 481 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 RPL7P39-201ENST00000481157 744 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 SNORA70.11-201ENST00000515987 138 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 SNORA70.13-201ENST00000516116 138 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms