Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 SNORA43.1-201ENST00000364863 140 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 GCNT1P4-201ENST00000404096 329 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 RN7SKP144-201ENST00000411108 279 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 RN7SKP161-201ENST00000411110 305 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 RNU2-18P-201ENST00000411224 162 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 PSMD10P2-201ENST00000432890 672 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 MRPS21P3-201ENST00000436696 262 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC010240.2-201ENST00000445363 1205 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 HMGB1P7-201ENST00000450921 612 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 RN7SL168P-201ENST00000463821 279 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC122718.2-201ENST00000505325 591 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 Y_RNA.710-201ENST00000516975 110 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 RNA5SP400-201ENST00000517155 111 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC092865.1-201ENST00000544395 1023 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 MRPS21P8-201ENST00000569196 235 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 MIR4502-201ENST00000580432 81 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AP001823.1-201ENST00000604056 1003 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AC137695.1-201ENST00000604126 489 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 MIR7109-201ENST00000613748 65 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AP003789.1-201ENST00000617737 605 ntBASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
C9orf40Q8IXQ3 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC097634.1-201ENST00000604491 2467 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 XKRY2-202ENST00000623874 1581 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 XKRY-202ENST00000624960 1581 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 LINC01616-201ENST00000561816 2280 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 CCAT2-201ENST00000630920 1752 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RNA5SP110-201ENST00000362638 115 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RNA5SP115-201ENST00000411160 107 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL354707.3-201ENST00000427308 331 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 IGLV3-4-201ENST00000432300 244 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RPL5P7-201ENST00000444235 813 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 GAPDHP23-201ENST00000444823 993 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RPS27AP3-201ENST00000453803 454 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC114982.2-201ENST00000461396 358 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RN7SL221P-201ENST00000466190 281 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC128716.1-201ENST00000475129 166 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RN7SL165P-201ENST00000477476 291 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RPL37P23-201ENST00000492641 294 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 OR7E99P-201ENST00000505750 922 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 RPA2P3-201ENST00000533268 770 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC084121.1-201ENST00000533882 835 ntBASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.76□□□□□ -1.49
C9orf40Q8IXQ3 AC002519.2-203ENST00000567043 837 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms