Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC009120.2-204ENST00000621548 2032 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 PABPC1P6-201ENST00000445594 1829 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 CRP-204ENST00000368112 787 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 SUMO2P10-201ENST00000452006 288 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC105420.1-201ENST00000504389 582 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC022404.1-201ENST00000555320 273 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL121579.2-201ENST00000555466 590 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 OR7A11P-201ENST00000597719 953 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC097467.4-201ENST00000605504 141 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC004808.2-201ENST00000627965 773 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 UGT2B27P-201ENST00000505092 1620 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL161901.1-201ENST00000624954 3425 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 RNA5SP375-201ENST00000362975 119 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 RN7SL727P-201ENST00000482164 296 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 IGKV1D-22-201ENST00000518953 324 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 OR8G3P-201ENST00000533406 921 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 MIR6748-201ENST00000610433 71 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AF117829.2-201ENST00000619538 361 ntBASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AP002370.1-201ENST00000528055 1602 ntBASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 GAPDHP23-201ENST00000444823 993 ntBASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 RN7SL466P-201ENST00000497546 295 ntBASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 RNA5SP92-201ENST00000516437 110 ntBASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC88AQ3V6T2 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC88AQ3V6T2 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms