Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 USP2-AS1-205ENST00000578923 895 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MTND1P15-201ENST00000579262 949 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC090358.1-201ENST00000579862 852 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RN7SL473P-201ENST00000580341 299 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC004477.2-201ENST00000583349 192 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 YTHDF2P1-201ENST00000604759 1271 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 FXYD6P1-201ENST00000604857 285 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC108747.1-201ENST00000609508 535 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL451054.3-201ENST00000611115 776 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MIR6872-201ENST00000612981 62 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC100793.4-201ENST00000613683 429 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC012676.3-201ENST00000614983 479 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC245028.3-201ENST00000618197 285 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC005383.1-201ENST00000622689 534 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC073348.1-201ENST00000623002 331 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC135068.5-201ENST00000624197 983 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC026950.2-201ENST00000633456 470 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC068205.4-201ENST00000637880 804 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC006927.3-201ENST00000638789 384 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 BCL2L11-224ENST00000639340 243 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC087565.3-203ENST00000641018 837 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC107021.2-201ENST00000567714 2095 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 GPM6A-202ENST00000393658 2821 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL023806.3-201ENST00000638502 2704 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 OAS2-207ENST00000620097 2908 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
CCDC140Q96MF4 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RNF6P1-201ENST00000444889 1784 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 EML5-201ENST00000380664 5910 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 DLG2-202ENST00000330014 2789 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ENTPD5-201ENST00000334696 5842 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TMC1-202ENST00000340019 3068 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 NUCB2-201ENST00000323688 1905 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LIN9-205ENST00000481685 1916 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 HIST1H4F-201ENST00000244537 312 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 SNORA71D-201ENST00000363484 134 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 MIR217-201ENST00000384817 110 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 IGLV3-32-201ENST00000390303 383 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RNA5SP185-201ENST00000390963 114 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 OLA1P1-201ENST00000396387 1189 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 OR51A3P-201ENST00000413596 924 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TRBV30-201ENST00000417977 447 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 Z93242.1-201ENST00000427102 353 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC022022.1-201ENST00000430304 178 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 CYCSP11-201ENST00000436426 315 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ZNF195-208ENST00000438262 1018 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 MTATP6P13-201ENST00000438531 667 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TRIM60P18-201ENST00000441518 828 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 USP9YP29-201ENST00000445112 563 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TPTE2P6-202ENST00000445572 1007 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RPS4XP12-201ENST00000461747 709 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RN7SL368P-201ENST00000473384 277 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 PPP1R2P6-201ENST00000478565 588 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC109486.1-201ENST00000486833 374 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ACTG1P13-201ENST00000486987 1043 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms