Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 AC007842.1-201ENST00000597336 2039 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.91□□□□□ -1.14
COL18A1P39060 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC7.91□□□□□ -1.14
COL18A1P39060 FO393409.1-201ENST00000399325 1372 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.91□□□□□ -1.14
COL18A1P39060 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 AC016583.1-201ENST00000624221 2431 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.91□□□□□ -1.14
COL18A1P39060 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL18A1P39060 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 MFSD8-218ENST00000641186 4448 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
COL18A1P39060 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC7.91□□□□□ -1.14
COL18A1P39060 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.91□□□□□ -1.14
COL18A1P39060 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 RPL35AP24-201ENST00000413846 330 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 MRPS16P1-201ENST00000523462 412 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 OR4A46P-201ENST00000527255 933 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.91□□□□□ -1.14
COL18A1P39060 MIR5095-201ENST00000578844 88 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.91□□□□□ -1.14
COL18A1P39060 AL049840.6-201ENST00000604583 345 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.91□□□□□ -1.14
COL18A1P39060 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 AC022905.1-201ENST00000503430 3048 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 AC089998.1-201ENST00000548575 3141 ntBASIC7.91□□□□□ -1.14
COL18A1P39060 DPY19L4-201ENST00000414645 6197 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.14
COL18A1P39060 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.91□□□□□ -1.14
COL18A1P39060 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.91□□□□□ -1.14
COL18A1P39060 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL18A1P39060 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
COL18A1P39060 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.9□□□□□ -1.14
COL18A1P39060 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
COL18A1P39060 OR10R3P-201ENST00000361688 942 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 SNORA74A-201ENST00000364089 198 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 OR5W1P-201ENST00000423705 938 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.9□□□□□ -1.14
COL18A1P39060 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC7.9□□□□□ -1.14
COL18A1P39060 RN7SL860P-201ENST00000473738 223 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 IGHV1-14-201ENST00000523391 241 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.9□□□□□ -1.14
COL18A1P39060 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.9□□□□□ -1.14
COL18A1P39060 AL359513.1-201ENST00000614364 557 ntBASIC7.9□□□□□ -1.14
COL18A1P39060 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.9□□□□□ -1.14
COL18A1P39060 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
COL18A1P39060 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.9□□□□□ -1.14
COL18A1P39060 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL18A1P39060 MAPK10-338ENST00000641647 3362 ntBASIC7.9□□□□□ -1.15
COL18A1P39060 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC7.9□□□□□ -1.15
COL18A1P39060 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL18A1P39060 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
COL18A1P39060 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 RPS4XP5-201ENST00000419038 768 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 OR56A7P-201ENST00000524865 941 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.89□□□□□ -1.15
COL18A1P39060 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.89□□□□□ -1.15
COL18A1P39060 AC145423.1-201ENST00000605712 336 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 AF117829.2-201ENST00000619538 361 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 AC068870.2-201ENST00000620635 389 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 CASC19-222ENST00000641321 1173 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC7.89□□□□□ -1.15
COL18A1P39060 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 C4BPAP1-201ENST00000415474 1893 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.89□□□□□ -1.15
COL18A1P39060 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL18A1P39060 AC007342.5-201ENST00000571340 2142 ntBASIC7.89□□□□□ -1.15
COL18A1P39060 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.89□□□□□ -1.15
COL18A1P39060 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.89□□□□□ -1.15
COL18A1P39060 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL18A1P39060 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL18A1P39060 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
COL18A1P39060 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
COL18A1P39060 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms