Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXA9P31269 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.6□□□□□ -1.35
HOXA9P31269 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXA9P31269 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXA9P31269 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.6□□□□□ -1.35
HOXA9P31269 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXA9P31269 AL357153.4-201ENST00000620487 1016 ntBASIC6.6□□□□□ -1.35
HOXA9P31269 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.6□□□□□ -1.35
HOXA9P31269 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXA9P31269 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXA9P31269 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXA9P31269 AC009831.5-201ENST00000624000 3189 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXA9P31269 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 SNORA17A-201ENST00000391185 133 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AL031985.1-201ENST00000392713 418 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 LYPLA1P3-201ENST00000402650 695 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.59□□□□□ -1.35
HOXA9P31269 AL139415.1-201ENST00000424862 352 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 CDY8P-201ENST00000428380 1279 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 RPL12P16-201ENST00000431098 498 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 PPIAP10-201ENST00000438675 458 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXA9P31269 CDY20P-201ENST00000447528 1279 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 BZW1P1-201ENST00000454901 1240 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
HOXA9P31269 AC011411.1-201ENST00000509592 876 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 CR383658.1-201ENST00000514609 734 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AP001858.2-201ENST00000536213 601 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXA9P31269 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXA9P31269 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXA9P31269 AC027243.2-201ENST00000602530 724 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 AL445647.2-201ENST00000615170 130 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXA9P31269 SNORA17.5-201ENST00000630429 132 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 AL132640.3-201ENST00000630473 177 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXA9P31269 AC018717.1-201ENST00000457712 1505 ntBASIC6.59□□□□□ -1.35
HOXA9P31269 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
HOXA9P31269 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
HOXA9P31269 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.59□□□□□ -1.36
HOXA9P31269 AL117339.4-201ENST00000608335 7063 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.58□□□□□ -1.36
HOXA9P31269 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
HOXA9P31269 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.58□□□□□ -1.36
HOXA9P31269 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
HOXA9P31269 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.58□□□□□ -1.36
HOXA9P31269 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXA9P31269 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 RNA5SP477-201ENST00000362639 119 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
HOXA9P31269 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
HOXA9P31269 AC005522.1-201ENST00000395416 346 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 AL512422.1-201ENST00000407033 553 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 AL391987.1-201ENST00000441025 200 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 HLA-DPA3-207ENST00000454398 229 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 PPIAP19-201ENST00000486414 492 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 RN7SL101P-201ENST00000496350 279 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 RN7SKP238-201ENST00000516483 249 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXA9P31269 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXA9P31269 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXA9P31269 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HOXA9P31269 AC011445.2-201ENST00000599274 173 ntBASIC6.58□□□□□ -1.36
HOXA9P31269 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.58□□□□□ -1.36
HOXA9P31269 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms