Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC3.68□□□□□ -1.82
APOBP04114 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 TAF8-201ENST00000372977 6680 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 BIN2P1-201ENST00000504996 1530 ntBASIC3.68□□□□□ -1.82
APOBP04114 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC3.68□□□□□ -1.82
APOBP04114 AC092724.1-201ENST00000624623 3397 ntBASIC3.68□□□□□ -1.82
APOBP04114 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
APOBP04114 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
APOBP04114 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.68□□□□□ -1.82
APOBP04114 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC3.68□□□□□ -1.82
APOBP04114 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 AL133406.3-201ENST00000606817 541 ntBASIC3.68□□□□□ -1.82
APOBP04114 AL355974.3-201ENST00000617383 467 ntBASIC3.68□□□□□ -1.82
APOBP04114 CD86-204ENST00000469710 1604 ntTSL 2 BASIC3.68□□□□□ -1.82
APOBP04114 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
APOBP04114 SLC6A4-201ENST00000261707 6604 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
APOBP04114 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 FBXO48-201ENST00000377957 5666 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 RN7SL30P-201ENST00000488416 306 ntBASIC3.67□□□□□ -1.82
APOBP04114 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC3.67□□□□□ -1.82
APOBP04114 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.67□□□□□ -1.82
APOBP04114 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
APOBP04114 OR4D9-202ENST00000641278 6063 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
APOBP04114 WDR31-201ENST00000341761 4862 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 MIR223-201ENST00000385204 110 ntBASIC3.67□□□□□ -1.82
APOBP04114 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
APOBP04114 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 SDC4P-201ENST00000453285 601 ntBASIC3.67□□□□□ -1.82
APOBP04114 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 RNU6-615P-201ENST00000516065 106 ntBASIC3.67□□□□□ -1.82
APOBP04114 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 LCORL-207ENST00000635767 10430 ntTSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 PRICKLE1-213ENST00000639589 5761 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 AL359091.1-201ENST00000449048 1734 ntBASIC3.67□□□□□ -1.82
APOBP04114 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 MAPK10-323ENST00000641493 3207 ntBASIC3.67□□□□□ -1.82
APOBP04114 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 RBMY2QP-201ENST00000429799 1147 ntBASIC3.67□□□□□ -1.82
APOBP04114 AC006335.2-201ENST00000437993 330 ntBASIC3.67□□□□□ -1.82
APOBP04114 AC006463.2-201ENST00000473326 348 ntBASIC3.67□□□□□ -1.82
APOBP04114 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 OR7E158P-201ENST00000524483 910 ntBASIC3.67□□□□□ -1.82
APOBP04114 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 FO393409.1-201ENST00000399325 1372 ntBASIC3.67□□□□□ -1.82
APOBP04114 SCN5A-210ENST00000455624 7170 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 DIP2C-201ENST00000280886 7888 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
APOBP04114 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 TFCP2L1-201ENST00000263707 9292 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
APOBP04114 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC3.67□□□□□ -1.82
APOBP04114 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 AL023284.3-201ENST00000407767 334 ntBASIC3.66□□□□□ -1.82
APOBP04114 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC3.66□□□□□ -1.82
APOBP04114 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC3.66□□□□□ -1.82
APOBP04114 RPS27P18-201ENST00000431701 247 ntBASIC3.66□□□□□ -1.82
APOBP04114 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC3.66□□□□□ -1.82
APOBP04114 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
APOBP04114 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms