Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.25□□□□□ -1.41
LDLRP01130 AL360271.1-201ENST00000395679 510 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AL050335.1-201ENST00000396909 869 ntBASIC6.25□□□□□ -1.41
LDLRP01130 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC6.25□□□□□ -1.41
LDLRP01130 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AC245884.2-201ENST00000426257 404 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.25□□□□□ -1.41
LDLRP01130 GAPDHP37-201ENST00000442317 968 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.25□□□□□ -1.41
LDLRP01130 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 RN7SL390P-201ENST00000470634 284 ntBASIC6.25□□□□□ -1.41
LDLRP01130 RN7SL165P-201ENST00000477476 291 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.25□□□□□ -1.41
LDLRP01130 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 AC026774.2-201ENST00000513990 1098 ntBASIC6.25□□□□□ -1.41
LDLRP01130 SNORA81.2-201ENST00000516868 170 ntBASIC6.25□□□□□ -1.41
LDLRP01130 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 RN7SL261P-201ENST00000613441 282 ntBASIC6.25□□□□□ -1.41
LDLRP01130 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.25□□□□□ -1.41
LDLRP01130 AC022400.9-201ENST00000623633 273 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AC027559.1-201ENST00000636288 271 ntBASIC6.25□□□□□ -1.41
LDLRP01130 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 AC062022.1-201ENST00000451026 1684 ntBASIC6.25□□□□□ -1.41
LDLRP01130 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
LDLRP01130 CASC19-228ENST00000641414 1684 ntBASIC6.25□□□□□ -1.41
LDLRP01130 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
LDLRP01130 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
LDLRP01130 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LDLRP01130 IFIT1P1-201ENST00000400497 1449 ntBASIC6.25□□□□□ -1.41
LDLRP01130 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LDLRP01130 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.24□□□□□ -1.41
LDLRP01130 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
LDLRP01130 VIM2P-201ENST00000402383 1294 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AL049697.3-201ENST00000406493 982 ntBASIC6.24□□□□□ -1.41
LDLRP01130 CYCSP17-201ENST00000407870 315 ntBASIC6.24□□□□□ -1.41
LDLRP01130 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 RFESDP1-201ENST00000422350 461 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.24□□□□□ -1.41
LDLRP01130 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.24□□□□□ -1.41
LDLRP01130 PSMD10P2-201ENST00000432890 672 ntBASIC6.24□□□□□ -1.41
LDLRP01130 MYL6P3-201ENST00000436904 432 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 TVP23CP1-201ENST00000450317 639 ntBASIC6.24□□□□□ -1.41
LDLRP01130 RPL5P16-201ENST00000471467 790 ntBASIC6.24□□□□□ -1.41
LDLRP01130 RPS26P6-201ENST00000475156 348 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AP002884.1-201ENST00000479691 655 ntBASIC6.24□□□□□ -1.41
LDLRP01130 RPL23AP68-201ENST00000480924 445 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AC021006.1-201ENST00000489849 553 ntBASIC6.24□□□□□ -1.41
LDLRP01130 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.24□□□□□ -1.41
LDLRP01130 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 AC018797.1-201ENST00000510791 255 ntBASIC6.24□□□□□ -1.41
LDLRP01130 RN7SKP196-201ENST00000516267 345 ntBASIC6.24□□□□□ -1.41
LDLRP01130 RNU6-964P-201ENST00000516524 69 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.24□□□□□ -1.41
LDLRP01130 AC084121.1-201ENST00000533882 835 ntBASIC6.24□□□□□ -1.41
LDLRP01130 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.24□□□□□ -1.41
LDLRP01130 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.24□□□□□ -1.41
LDLRP01130 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.24□□□□□ -1.41
LDLRP01130 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AC004241.2-201ENST00000614562 444 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AC005514.1-201ENST00000623521 208 ntBASIC6.24□□□□□ -1.41
LDLRP01130 AC073857.1-201ENST00000625082 1054 ntBASIC6.24□□□□□ -1.41
LDLRP01130 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
LDLRP01130 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.24□□□□□ -1.41
LDLRP01130 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.24□□□□□ -1.41
LDLRP01130 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LDLRP01130 AL078595.2-201ENST00000605309 1780 ntBASIC6.23□□□□□ -1.41
LDLRP01130 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.23□□□□□ -1.41
LDLRP01130 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LDLRP01130 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms