RNA–Protein interactions for RNA: ENST00000448748.1

LINC00349-201, long intergenic non-protein coding RNA 349, humanhuman

TSL 5 BASIC

Gene LINC00349, Length 841 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00349-201ENST00000448748 AEBP2Q6ZN18 517 aaPredicted RBP30.7■■■□□ 2.51
LINC00349-201ENST00000448748 CHIC1Q5VXU3 224 aa29.73■■■□□ 2.35
LINC00349-201ENST00000448748 PHF23Q9BUL5 403 aaPredicted RBP26.15■■□□□ 1.78
LINC00349-201ENST00000448748 SENP3Q9H4L4 574 aaPredicted RBP26.03■■□□□ 1.76
LINC00349-201ENST00000448748 FOXD1Q16676 465 aa24.23■■□□□ 1.47
LINC00349-201ENST00000448748 PLPPR3Q6T4P5 718 aa24.03■■□□□ 1.44
LINC00349-201ENST00000448748 PPP6R1Q9UPN7 881 aa23.16■■□□□ 1.3
LINC00349-201ENST00000448748 ADRA2BP18089 450 aa23.11■■□□□ 1.29
LINC00349-201ENST00000448748 PIAS4Q8N2W9 510 aaPredicted RBP22.78■■□□□ 1.24
LINC00349-201ENST00000448748 MSH5O43196 834 aa22.39■■□□□ 1.17
LINC00349-201ENST00000448748 PPP4R3CPQ6ZMV5 832 aa21.16■□□□□ 0.98
LINC00349-201ENST00000448748 SCAF1Q9H7N4 1312 aaKnown RBP21.09■□□□□ 0.97
LINC00349-201ENST00000448748 MAPK8IP2Q13387 824 aaPredicted RBP21.05■□□□□ 0.96
LINC00349-201ENST00000448748 POTEDQ86YR6 584 aa20.83■□□□□ 0.93
LINC00349-201ENST00000448748 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
LINC00349-201ENST00000448748 CNKSR2Q8WXI2 1034 aa20.6■□□□□ 0.89
LINC00349-201ENST00000448748 NCBP3Q53F19 620 aaKnown RBP20.5■□□□□ 0.87
LINC00349-201ENST00000448748 KCNA4P22459 653 aa20.44■□□□□ 0.86
LINC00349-201ENST00000448748 NPM3O75607 178 aaKnown RBP20.25■□□□□ 0.83
LINC00349-201ENST00000448748 RNF216Q9NWF9 866 aaPredicted RBP20.25■□□□□ 0.83
LINC00349-201ENST00000448748 HOXD11P31277 338 aaPredicted RBP20.24■□□□□ 0.83
LINC00349-201ENST00000448748 DCAF8L1A6NGE4 600 aa19.89■□□□□ 0.77
LINC00349-201ENST00000448748 DNAJC5BQ9UF47 199 aa19.65■□□□□ 0.74
LINC00349-201ENST00000448748 SLC4A1APQ9BWU0 796 aaKnown RBP19.4■□□□□ 0.7
LINC00349-201ENST00000448748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.29■□□□□ 0.68
LINC00349-201ENST00000448748 SLC4A2P04920 1241 aa19.19■□□□□ 0.66
LINC00349-201ENST00000448748 RNF39Q9H2S5 420 aa19.19■□□□□ 0.66
LINC00349-201ENST00000448748 U3KPZ7 1027 aaPredicted RBP18.98■□□□□ 0.63
LINC00349-201ENST00000448748 C1QBPQ07021 282 aaKnown RBP18.92■□□□□ 0.62
LINC00349-201ENST00000448748 CACNB1Q02641 598 aaPredicted RBP18.85■□□□□ 0.61
LINC00349-201ENST00000448748 FOXD4L1Q9NU39 408 aa18.85■□□□□ 0.61
LINC00349-201ENST00000448748 ZBTB22O15209 634 aa18.82■□□□□ 0.6
LINC00349-201ENST00000448748 MYCNP04198 464 aaPredicted RBP18.69■□□□□ 0.58
LINC00349-201ENST00000448748 EHMT2Q96KQ7 1210 aa18.62■□□□□ 0.57
LINC00349-201ENST00000448748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.59■□□□□ 0.57
LINC00349-201ENST00000448748 HNRNPUL2Q1KMD3 747 aaKnown RBP18.59■□□□□ 0.57
LINC00349-201ENST00000448748 SAMD1Q6SPF0 538 aaPredicted RBP18.54■□□□□ 0.56
LINC00349-201ENST00000448748 SPINK5Q9NQ38 1064 aaPredicted RBP18.53■□□□□ 0.56
LINC00349-201ENST00000448748 CSRNP3Q8WYN3 585 aa18.5■□□□□ 0.55
LINC00349-201ENST00000448748 CAPN15O75808 1086 aa18.44■□□□□ 0.54
LINC00349-201ENST00000448748 APLP2Q06481 763 aa18.44■□□□□ 0.54
LINC00349-201ENST00000448748 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
LINC00349-201ENST00000448748 ZNF219Q9P2Y4 722 aaPredicted RBP18.26■□□□□ 0.51
LINC00349-201ENST00000448748 ATF5Q9Y2D1 282 aaPredicted RBP18.26■□□□□ 0.51
LINC00349-201ENST00000448748 ATXN8OSP0DMR3 200 aa18.18■□□□□ 0.5
LINC00349-201ENST00000448748 DSG3P32926 999 aa18.18■□□□□ 0.5
LINC00349-201ENST00000448748 ABCB7O75027 752 aa18.1■□□□□ 0.49
LINC00349-201ENST00000448748 POLA2Q14181 598 aa17.96■□□□□ 0.47
LINC00349-201ENST00000448748 ZBTB12Q9Y330 459 aaPredicted RBP17.59■□□□□ 0.41
LINC00349-201ENST00000448748 MKRN4PQ13434 485 aaPredicted RBP17.45■□□□□ 0.38
LINC00349-201ENST00000448748 FBLN2P98095 1184 aa17.44■□□□□ 0.38
LINC00349-201ENST00000448748 OSCARQ8IYS5 282 aa17.36■□□□□ 0.37
LINC00349-201ENST00000448748 RBM42Q9BTD8 480 aaKnown RBP17.3■□□□□ 0.36
LINC00349-201ENST00000448748 SPDYE2BA6NHP3 402 aa17.12■□□□□ 0.33
LINC00349-201ENST00000448748 SPDYE6P0CI01 402 aa17.12■□□□□ 0.33
LINC00349-201ENST00000448748 SPDYE2Q495Y8 402 aa17.12■□□□□ 0.33
LINC00349-201ENST00000448748 AKT1S1Q96B36 256 aa17.05■□□□□ 0.32
LINC00349-201ENST00000448748 ZNF692Q9BU19 519 aaPredicted RBP17.04■□□□□ 0.32
LINC00349-201ENST00000448748 SSUH2Q9Y2M2 353 aa16.98■□□□□ 0.31
LINC00349-201ENST00000448748 SPDYE4A6NLX3 237 aa16.92■□□□□ 0.3
LINC00349-201ENST00000448748 REM2Q8IYK8 340 aaPredicted RBP16.9■□□□□ 0.3
LINC00349-201ENST00000448748 NISCHQ9Y2I1 1504 aa16.89■□□□□ 0.29
LINC00349-201ENST00000448748 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
LINC00349-201ENST00000448748 PITPNM1O00562 1244 aa16.73■□□□□ 0.27
LINC00349-201ENST00000448748 FKBP8Q14318 412 aa16.73■□□□□ 0.27
LINC00349-201ENST00000448748 CHRDL2Q6WN34 429 aa16.7■□□□□ 0.26
LINC00349-201ENST00000448748 SPDYE1Q8NFV5 336 aaPredicted RBP16.67■□□□□ 0.26
LINC00349-201ENST00000448748 CLEC11AQ9Y240 323 aa16.64■□□□□ 0.25
LINC00349-201ENST00000448748 PROM2Q8N271 834 aa16.6■□□□□ 0.25
LINC00349-201ENST00000448748 FXR2P51116 673 aaKnown RBP eCLIP16.45■□□□□ 0.22
LINC00349-201ENST00000448748 PIP4P2Q8N4L2 257 aa16.45■□□□□ 0.22
LINC00349-201ENST00000448748 STAG3Q9UJ98 1225 aa16.45■□□□□ 0.22
LINC00349-201ENST00000448748 PRR29P0C7W0 189 aa16.44■□□□□ 0.22
LINC00349-201ENST00000448748 POTEHQ6S545 545 aa16.44■□□□□ 0.22
LINC00349-201ENST00000448748 PRKAR2AP13861 404 aaKnown RBP16.3■□□□□ 0.2
LINC00349-201ENST00000448748 CHADLQ6NUI6 762 aa16.28■□□□□ 0.2
LINC00349-201ENST00000448748 CREBZFQ9NS37 354 aa16.19■□□□□ 0.18
LINC00349-201ENST00000448748 FBXO3Q9UK99 471 aa16.15■□□□□ 0.18
LINC00349-201ENST00000448748 MIER1Q8N108 512 aa16.07■□□□□ 0.16
LINC00349-201ENST00000448748 FARP1Q9Y4F1 1045 aaPredicted RBP16.07■□□□□ 0.16
LINC00349-201ENST00000448748 PLCD3Q8N3E9 789 aa16.02■□□□□ 0.16
LINC00349-201ENST00000448748 MNX1P50219 401 aaPredicted RBP16.01■□□□□ 0.15
LINC00349-201ENST00000448748 HAX1O00165 279 aa15.97■□□□□ 0.15
LINC00349-201ENST00000448748 VASPP50552 380 aaPredicted RBP15.97■□□□□ 0.15
LINC00349-201ENST00000448748 PLEKHG5O94827 1062 aa15.96■□□□□ 0.15
LINC00349-201ENST00000448748 C19orf67A6NJJ6 358 aa15.89■□□□□ 0.13
LINC00349-201ENST00000448748 NPM1P06748 294 aaKnown RBP eCLIP15.88■□□□□ 0.13
LINC00349-201ENST00000448748 EVX2Q03828 476 aa15.87■□□□□ 0.13
LINC00349-201ENST00000448748 CD44P16070 742 aaKnown RBP15.82■□□□□ 0.12
LINC00349-201ENST00000448748 ZBTB47Q9UFB7 747 aaPredicted RBP15.82■□□□□ 0.12
LINC00349-201ENST00000448748 IFNLR1Q8IU57 520 aaPredicted RBP15.76■□□□□ 0.11
LINC00349-201ENST00000448748 KLHL34Q8N239 644 aa15.75■□□□□ 0.11
LINC00349-201ENST00000448748 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
LINC00349-201ENST00000448748 ZRANB1Q9UGI0 708 aa15.7■□□□□ 0.1
LINC00349-201ENST00000448748 NUBP1P53384 320 aa15.69■□□□□ 0.1
LINC00349-201ENST00000448748 RASEFQ8IZ41 740 aa15.69■□□□□ 0.1
LINC00349-201ENST00000448748 PAK3O75914 559 aaPredicted RBP15.67■□□□□ 0.1
LINC00349-201ENST00000448748 TSPYL2Q9H2G4 693 aaPredicted RBP15.65■□□□□ 0.1
LINC00349-201ENST00000448748 ZNF579Q8NAF0 562 aaKnown RBP15.59■□□□□ 0.09
LINC00349-201ENST00000448748 SPOCK2Q92563 424 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms