Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 RNU1-24P-201ENST00000364285 165 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 MIR541-201ENST00000401360 84 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 VN1R12P-201ENST00000403778 876 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 REREP1Y-201ENST00000422655 198 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 REREP2Y-201ENST00000439103 200 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 NPM1P23-201ENST00000440193 849 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC118282.1-201ENST00000506408 765 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC092375.1-201ENST00000550410 637 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC090888.3-201ENST00000558917 509 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AL158211.1-201ENST00000566763 763 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 MTND2P13-201ENST00000577438 1039 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC245052.7-201ENST00000601161 359 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC090506.2-201ENST00000624521 419 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC068213.1-201ENST00000625124 226 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 PSMC1P4-201ENST00000515236 1327 ntBASIC6.73□□□□□ -1.33
DKK3Q9UBP4 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
DKK3Q9UBP4 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 ASNSP6-201ENST00000592770 1618 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC007012.2-201ENST00000623206 1676 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 SNORA38B-201ENST00000363524 131 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL451142.1-201ENST00000375867 775 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 RNU6-883P-201ENST00000384597 107 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TRAV35-201ENST00000390462 330 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 CXADRP1-201ENST00000398098 1095 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC096537.2-201ENST00000413707 714 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 GTF3AP1-201ENST00000416942 1004 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 MTCYBP32-201ENST00000427945 1084 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 ZFAND6P1-201ENST00000434138 605 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC242426.1-201ENST00000435270 960 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC128677.1-201ENST00000436016 442 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 GAPDHP37-201ENST00000442317 968 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 HMGN1P8-201ENST00000463578 288 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC012123.2-201ENST00000485809 248 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 OR9G2P-201ENST00000533326 880 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AP003115.1-201ENST00000569849 463 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 MIR4760-201ENST00000585040 80 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL078623.1-201ENST00000602702 907 ntBASIC6.72□□□□□ -1.33
DKK3Q9UBP4 AL390877.1-201ENST00000605704 214 ntBASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms