Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AP003385.1-201ENST00000426387 893 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AC016027.5-201ENST00000427227 210 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL445687.2-201ENST00000458156 728 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 snoU13.29-201ENST00000459370 104 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 RN7SL643P-201ENST00000471845 291 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.11□□□□□ -1.43
PKNOX1P55347 RN7SL655P-201ENST00000486087 298 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.11□□□□□ -1.43
PKNOX1P55347 IGHV4-55-201ENST00000520889 368 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC6.11□□□□□ -1.43
PKNOX1P55347 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.11□□□□□ -1.43
PKNOX1P55347 CHEK2P2-201ENST00000554701 672 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 NPIPB1P-202ENST00000588786 828 ntBASIC6.11□□□□□ -1.43
PKNOX1P55347 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.11□□□□□ -1.43
PKNOX1P55347 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.11□□□□□ -1.43
PKNOX1P55347 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
PKNOX1P55347 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
PKNOX1P55347 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
PKNOX1P55347 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
PKNOX1P55347 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AL445238.1-204ENST00000400311 463 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AL121835.1-201ENST00000404250 354 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AC021876.1-201ENST00000425959 359 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AC083855.1-201ENST00000440041 258 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 MORF4-201ENST00000447135 971 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 SLAMF6P1-201ENST00000451067 602 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 TREML3P-201ENST00000457327 501 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 RPL5P33-201ENST00000487833 905 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.1□□□□□ -1.43
PKNOX1P55347 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.1□□□□□ -1.43
PKNOX1P55347 OR6M2P-201ENST00000529831 871 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 NIFKP4-201ENST00000567275 1192 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 RN7SL32P-201ENST00000580514 281 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 MIR4420-201ENST00000583944 77 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 SNORA74.4-201ENST00000607595 199 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.1□□□□□ -1.43
PKNOX1P55347 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 NCOA4P2-201ENST00000340589 1813 ntBASIC6.1□□□□□ -1.43
PKNOX1P55347 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.1□□□□□ -1.43
PKNOX1P55347 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.1□□□□□ -1.43
PKNOX1P55347 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
PKNOX1P55347 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.09□□□□□ -1.43
PKNOX1P55347 HDAC1P2-201ENST00000453661 1398 ntBASIC6.09□□□□□ -1.43
PKNOX1P55347 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
PKNOX1P55347 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
PKNOX1P55347 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
PKNOX1P55347 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PKNOX1P55347 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.09□□□□□ -1.43
PKNOX1P55347 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PKNOX1P55347 SNORA7A-201ENST00000384765 139 ntBASIC6.09□□□□□ -1.43
PKNOX1P55347 RNA5SP155-201ENST00000411154 129 ntBASIC6.09□□□□□ -1.43
PKNOX1P55347 NFU1P1-201ENST00000413128 774 ntBASIC6.09□□□□□ -1.43
PKNOX1P55347 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.09□□□□□ -1.43
PKNOX1P55347 AL645939.3-201ENST00000435408 225 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms