Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6.34□□□□□ -1.39
MSH3P20585 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.34□□□□□ -1.39
MSH3P20585 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.34□□□□□ -1.39
MSH3P20585 COX4I1P2-201ENST00000447446 547 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AL359839.1-201ENST00000451975 1160 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC117500.1-201ENST00000497352 755 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 AC111000.5-201ENST00000506559 1178 ntBASIC6.34□□□□□ -1.39
MSH3P20585 MTCO3P42-201ENST00000509488 518 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.34□□□□□ -1.39
MSH3P20585 MTCO3P39-201ENST00000514812 518 ntBASIC6.34□□□□□ -1.39
MSH3P20585 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.34□□□□□ -1.39
MSH3P20585 CYCSP25-201ENST00000525280 316 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AP005639.1-201ENST00000526939 192 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.34□□□□□ -1.39
MSH3P20585 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.34□□□□□ -1.39
MSH3P20585 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.34□□□□□ -1.39
MSH3P20585 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.34□□□□□ -1.39
MSH3P20585 AL589863.1-201ENST00000595383 631 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC073046.2-201ENST00000604756 527 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC048341.3-201ENST00000619323 491 ntBASIC6.34□□□□□ -1.39
MSH3P20585 MIR6823-201ENST00000622118 61 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AL109924.4-201ENST00000623089 670 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC087821.1-201ENST00000623639 567 ntBASIC6.34□□□□□ -1.39
MSH3P20585 AC063952.1-203ENST00000634410 658 ntBASIC6.34□□□□□ -1.39
MSH3P20585 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSH3P20585 AL359976.1-201ENST00000418655 3528 ntBASIC6.34□□□□□ -1.39
MSH3P20585 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.34□□□□□ -1.39
MSH3P20585 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.34□□□□□ -1.4
MSH3P20585 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.4
MSH3P20585 MAPK10-261ENST00000641050 3109 ntBASIC6.34□□□□□ -1.4
MSH3P20585 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.4
MSH3P20585 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
MSH3P20585 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
MSH3P20585 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.33□□□□□ -1.4
MSH3P20585 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.33□□□□□ -1.4
MSH3P20585 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.33□□□□□ -1.4
MSH3P20585 AKAP17BP-201ENST00000431706 2719 ntBASIC6.33□□□□□ -1.4
MSH3P20585 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 OR11H13P-201ENST00000359695 979 ntBASIC6.33□□□□□ -1.4
MSH3P20585 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
MSH3P20585 YY1P1-201ENST00000427625 668 ntBASIC6.33□□□□□ -1.4
MSH3P20585 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 LINC00328-2P-201ENST00000436585 219 ntBASIC6.33□□□□□ -1.4
MSH3P20585 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.33□□□□□ -1.4
MSH3P20585 GM2AP2-201ENST00000491764 562 ntBASIC6.33□□□□□ -1.4
MSH3P20585 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.33□□□□□ -1.4
MSH3P20585 AC091917.2-201ENST00000505002 744 ntBASIC6.33□□□□□ -1.4
MSH3P20585 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 COX6B1P4-201ENST00000519826 484 ntBASIC6.33□□□□□ -1.4
MSH3P20585 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 AC073916.1-201ENST00000545095 130 ntBASIC6.33□□□□□ -1.4
MSH3P20585 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.33□□□□□ -1.4
MSH3P20585 AC026898.1-201ENST00000586404 571 ntBASIC6.33□□□□□ -1.4
MSH3P20585 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.33□□□□□ -1.4
MSH3P20585 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSH3P20585 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.33□□□□□ -1.4
MSH3P20585 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
MSH3P20585 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.33□□□□□ -1.4
MSH3P20585 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 NR1H5P-201ENST00000452683 1377 ntBASIC6.32□□□□□ -1.4
MSH3P20585 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 AL662795.2-201ENST00000624252 3706 ntBASIC6.32□□□□□ -1.4
MSH3P20585 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
MSH3P20585 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 METTL5-202ENST00000308099 629 ntTSL 3 BASIC6.32□□□□□ -1.4
MSH3P20585 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 PSMA6P1-201ENST00000400275 741 ntBASIC6.32□□□□□ -1.4
MSH3P20585 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 AC007568.1-201ENST00000422912 471 ntBASIC6.32□□□□□ -1.4
MSH3P20585 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 BMP6P1-201ENST00000431230 679 ntBASIC6.32□□□□□ -1.4
MSH3P20585 EMC3-AS1-205ENST00000438698 534 ntBASIC6.32□□□□□ -1.4
MSH3P20585 GTF2IP14-201ENST00000441415 586 ntBASIC6.32□□□□□ -1.4
MSH3P20585 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms