Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RFESD-208ENST00000513950 464 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 SNORA19.3-201ENST00000516165 130 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AP000916.1-201ENST00000533869 835 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CYB5AP5-201ENST00000549779 389 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 EIF4A3P1-201ENST00000578499 647 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MIR3159-201ENST00000584572 74 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 NDUFB9P1-201ENST00000604683 510 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MIR8082-201ENST00000612488 81 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 RN7SL126P-201ENST00000616400 299 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC105105.5-201ENST00000622635 1294 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC006453.3-201ENST00000635891 377 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CASC19-232ENST00000641480 1244 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AL359263.1-201ENST00000441188 2796 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 KYNUP2-201ENST00000582280 1329 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 OR11H13P-201ENST00000359695 979 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 RNA5SP429-201ENST00000363688 109 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 MIR138-2-201ENST00000384916 84 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 PDCL3P5-201ENST00000398028 722 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 MTCO2P31-201ENST00000402702 684 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 RN7SKP268-201ENST00000411107 316 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 MEAF6P1-201ENST00000416092 327 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 GSTA6P-201ENST00000424144 582 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 SNRPEP5-201ENST00000425442 278 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 DSTNP5-201ENST00000427921 523 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC093422.3-201ENST00000428506 305 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 MYO5BP3-201ENST00000431872 1279 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC114402.2-201ENST00000432760 643 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 USP9YP24-201ENST00000434374 697 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 SETP8-201ENST00000435341 628 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 PSMD8P1-201ENST00000436275 769 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AL604028.2-201ENST00000437848 788 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 USP9YP17-201ENST00000444617 696 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 OR51P1P-201ENST00000447547 942 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC002486.2-201ENST00000447806 590 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC079193.1-201ENST00000460497 588 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC018639.1-201ENST00000492994 442 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 CFI-204ENST00000510800 667 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 MIR4800-201ENST00000537353 80 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC026458.1-201ENST00000564330 438 ntBASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.97□□□□□ -1.29
TRIM39Q9HCM9 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms