Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR4A42P-201ENST00000531397 938 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 MIR3934-201ENST00000579806 107 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 MIR7159-201ENST00000620587 66 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ANO3-201ENST00000256737 6642 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC005332.9-201ENST00000620266 2921 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 MTCYBP21-201ENST00000443300 1113 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AC011753.3-201ENST00000443436 406 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RPS23P9-201ENST00000448848 438 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RN7SL97P-201ENST00000486780 299 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RPL37AP8-201ENST00000494116 276 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AC097717.1-225ENST00000600829 709 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AL390774.1-201ENST00000411924 246 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SLC35E1P1-201ENST00000419313 864 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AC005297.1-201ENST00000444765 862 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RPL7P61-201ENST00000451721 751 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 MRPS16P1-201ENST00000523462 412 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 MIR192-201ENST00000384915 110 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 RPS3AP41-201ENST00000462701 778 ntBASIC5.88□□□□□ -1.47
VPS13AQ96RL7 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.88□□□□□ -1.47
VPS13AQ96RL7 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 OFD1P10Y-201ENST00000434110 1433 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 MYLK-205ENST00000360772 10027 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 EDA-213ENST00000616899 4643 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC127024.8-201ENST00000623719 2094 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 CSMD1-218ENST00000635120 11737 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 GON4L-202ENST00000361040 5118 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 RNU6-615P-201ENST00000516065 106 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC134698.5-201ENST00000519444 336 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 MIR4646-201ENST00000580775 63 ntBASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 RP1-201ENST00000220676 7100 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 CD34-201ENST00000310833 8246 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS13AQ96RL7 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms