Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 AC091078.2-201ENST00000557145 559 ntBASIC10.2□□□□□ -0.78
CUX1P39880 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
CUX1P39880 ATM-229ENST00000639953 587 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC10.2□□□□□ -0.78
CUX1P39880 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 AC105235.1-201ENST00000623208 1816 ntBASIC10.2□□□□□ -0.78
CUX1P39880 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC10.2□□□□□ -0.78
CUX1P39880 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC10.2□□□□□ -0.78
CUX1P39880 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC10.19□□□□□ -0.78
CUX1P39880 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 AC127024.8-201ENST00000623719 2094 ntBASIC10.19□□□□□ -0.78
CUX1P39880 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC10.19□□□□□ -0.78
CUX1P39880 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 MIR433-201ENST00000384837 93 ntBASIC10.19□□□□□ -0.78
CUX1P39880 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC10.19□□□□□ -0.78
CUX1P39880 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC10.19□□□□□ -0.78
CUX1P39880 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
CUX1P39880 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 COX6B1P2-201ENST00000489624 230 ntBASIC10.19□□□□□ -0.78
CUX1P39880 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC10.19□□□□□ -0.78
CUX1P39880 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC10.19□□□□□ -0.78
CUX1P39880 AC073916.1-201ENST00000545095 130 ntBASIC10.19□□□□□ -0.78
CUX1P39880 AC239803.2-201ENST00000610161 430 ntBASIC10.19□□□□□ -0.78
CUX1P39880 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC10.19□□□□□ -0.78
CUX1P39880 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC10.19□□□□□ -0.78
CUX1P39880 AC110597.1-201ENST00000562669 3176 ntBASIC10.19□□□□□ -0.78
CUX1P39880 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
CUX1P39880 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC10.18□□□□□ -0.78
CUX1P39880 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC10.18□□□□□ -0.78
CUX1P39880 AL662874.1-201ENST00000426065 230 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AL445928.1-201ENST00000435545 222 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC10.18□□□□□ -0.78
CUX1P39880 MGAT2P1-201ENST00000449718 797 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC10.18□□□□□ -0.78
CUX1P39880 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC10.18□□□□□ -0.78
CUX1P39880 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
CUX1P39880 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC10.18□□□□□ -0.78
CUX1P39880 OFD1P10Y-201ENST00000434110 1433 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AC011815.2-201ENST00000618230 2021 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC10.18□□□□□ -0.78
CUX1P39880 AC020978.8-201ENST00000571975 3022 ntBASIC10.18□□□□□ -0.78
CUX1P39880 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC10.18□□□□□ -0.78
CUX1P39880 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 MAPK10-344ENST00000641718 3746 ntBASIC10.18□□□□□ -0.78
CUX1P39880 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 AL359976.1-201ENST00000418655 3528 ntBASIC10.18□□□□□ -0.78
CUX1P39880 AP001541.1-201ENST00000623322 1904 ntBASIC10.18□□□□□ -0.78
CUX1P39880 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
CUX1P39880 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX1P39880 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC10.18□□□□□ -0.78
CUX1P39880 U3.7-201ENST00000363668 216 ntBASIC10.17□□□□□ -0.78
CUX1P39880 RN7SKP124-201ENST00000364730 341 ntBASIC10.17□□□□□ -0.78
CUX1P39880 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 RPL36P18-201ENST00000419316 318 ntBASIC10.17□□□□□ -0.78
CUX1P39880 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 AC009237.1-201ENST00000442127 744 ntBASIC10.17□□□□□ -0.78
CUX1P39880 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX1P39880 AL157777.1-201ENST00000468100 304 ntBASIC10.17□□□□□ -0.78
CUX1P39880 SIAH1P1-201ENST00000479411 923 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AC006539.1-201ENST00000481419 501 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AC108693.1-201ENST00000496068 432 ntBASIC10.17□□□□□ -0.78
CUX1P39880 GMFG-212ENST00000602185 423 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX1P39880 FO393422.1-201ENST00000603908 708 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AC211433.2-201ENST00000608433 387 ntBASIC10.17□□□□□ -0.78
CUX1P39880 AC004808.2-201ENST00000627965 773 ntBASIC10.17□□□□□ -0.78
CUX1P39880 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX1P39880 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX1P39880 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX1P39880 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms