Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZNF655-222ENST00000493277 1815 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
MSX2P35548 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX2P35548 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX2P35548 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
MSX2P35548 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 AC129502.1-201ENST00000623261 1654 ntBASIC6.49□□□□□ -1.37
MSX2P35548 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 AL049844.3-201ENST00000454207 1496 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 MTND4P5-201ENST00000435821 1374 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC079949.2-201ENST00000617117 2933 ntBASIC6.49□□□□□ -1.37
MSX2P35548 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 RNA5SP65-201ENST00000363166 119 ntBASIC6.49□□□□□ -1.37
MSX2P35548 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 IGHV4-34-201ENST00000390616 400 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
MSX2P35548 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 ELOBP4-201ENST00000423418 296 ntBASIC6.49□□□□□ -1.37
MSX2P35548 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 AC073900.1-201ENST00000429766 776 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AL392003.1-201ENST00000434394 243 ntBASIC6.49□□□□□ -1.37
MSX2P35548 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC245047.2-201ENST00000441060 530 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AL513321.1-201ENST00000441175 761 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AL096829.2-201ENST00000446582 742 ntBASIC6.49□□□□□ -1.37
MSX2P35548 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 RN7SL58P-201ENST00000473445 294 ntBASIC6.49□□□□□ -1.37
MSX2P35548 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 AC116562.1-201ENST00000485355 781 ntBASIC6.49□□□□□ -1.37
MSX2P35548 OR9N1P-201ENST00000491296 333 ntBASIC6.49□□□□□ -1.37
MSX2P35548 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC6.49□□□□□ -1.37
MSX2P35548 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 AC087257.2-201ENST00000538759 928 ntBASIC6.49□□□□□ -1.37
MSX2P35548 EGLN3P1-201ENST00000541727 720 ntBASIC6.49□□□□□ -1.37
MSX2P35548 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
MSX2P35548 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX2P35548 MTND3P13-201ENST00000574391 343 ntBASIC6.49□□□□□ -1.37
MSX2P35548 RN7SL311P-201ENST00000579858 306 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 FAM60CP-201ENST00000591086 664 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 PCNAP1-202ENST00000595299 752 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 AC080013.3-201ENST00000606839 578 ntBASIC6.49□□□□□ -1.37
MSX2P35548 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 AC078880.5-201ENST00000617845 421 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC021422.1-201ENST00000621212 473 ntBASIC6.49□□□□□ -1.37
MSX2P35548 AC079416.3-201ENST00000624479 549 ntBASIC6.49□□□□□ -1.37
MSX2P35548 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX2P35548 FGG-204ENST00000405164 1539 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX2P35548 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX2P35548 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 AP000547.3-204ENST00000588548 2523 ntBASIC6.48□□□□□ -1.37
MSX2P35548 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX2P35548 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX2P35548 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 DDX43P2-201ENST00000604753 1354 ntBASIC6.48□□□□□ -1.37
MSX2P35548 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX2P35548 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX2P35548 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 AL353763.1-201ENST00000624467 1628 ntBASIC6.48□□□□□ -1.37
MSX2P35548 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX2P35548 RACGAP1P-201ENST00000550663 1879 ntBASIC6.48□□□□□ -1.37
MSX2P35548 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.48□□□□□ -1.37
MSX2P35548 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms