Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC4P09017 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC4P09017 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 PPIAP10-201ENST00000438675 458 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 AP002884.1-201ENST00000479691 655 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 RPL34P33-201ENST00000486062 334 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 LSM3P4-201ENST00000502948 309 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 SNX18P24-201ENST00000505249 671 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.2□□□□□ -1.42
HOXC4P09017 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC4P09017 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 AC092332.1-201ENST00000563684 829 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 AC233702.7-202ENST00000582941 211 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC4P09017 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 AC110373.1-201ENST00000505994 3505 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 BRD7P1-201ENST00000557705 1915 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC4P09017 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 UGT2B27P-201ENST00000505092 1620 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
HOXC4P09017 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC4P09017 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 AC007998.4-201ENST00000612496 2533 ntBASIC6.2□□□□□ -1.42
HOXC4P09017 AC027575.3-201ENST00000583058 2747 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC4P09017 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC4P09017 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HOXC4P09017 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC130360.1-201ENST00000425489 1117 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AC097721.1-201ENST00000427150 1253 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 RPL6P30-201ENST00000443382 862 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 RBMY2AP-201ENST00000445405 1157 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 RBMY2CP-201ENST00000448575 1157 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 RBMY2DP-202ENST00000448881 1157 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 RBMY2BP-202ENST00000451071 1156 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC4P09017 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC4P09017 RBBP4P1-201ENST00000502424 1276 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 PRMT5P1-201ENST00000514351 598 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC4P09017 AP004607.6-201ENST00000525033 1202 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AC130365.2-201ENST00000525882 1201 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC005363.1-201ENST00000530779 351 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AP001858.2-201ENST00000536213 601 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC090888.3-201ENST00000558917 509 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXC4P09017 DYNLL1P1-201ENST00000595442 269 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 FAM27E2-201ENST00000619668 403 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC4P09017 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 AC010329.1-201ENST00000593903 8328 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 QRSL1P1-201ENST00000400977 1540 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXC4P09017 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXC4P09017 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 ZNF402P-201ENST00000404435 3100 ntBASIC6.19□□□□□ -1.42
HOXC4P09017 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXC4P09017 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HOXC4P09017 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.18□□□□□ -1.42
HOXC4P09017 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms