Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL157884.3-201ENST00000448273 1184 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 RN7SL392P-201ENST00000473024 299 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC004263.1-201ENST00000479327 332 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC079944.1-201ENST00000485426 495 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC079594.1-201ENST00000489757 331 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC016144.1-201ENST00000548175 1087 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 LYZ-202ENST00000548839 558 ntTSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 RPP40P2-201ENST00000603596 712 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC069431.2-201ENST00000604149 1099 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 IZUMO3-203ENST00000604921 743 ntAPPRIS P2 TSL 5 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AL136139.1-201ENST00000605568 222 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC021755.4-201ENST00000616620 456 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 HBG1-202ENST00000632727 369 ntTSL 3 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 ATM-229ENST00000639953 587 ntTSL 5 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AL139254.2-202ENST00000641937 1156 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AC034229.2-201ENST00000566945 2508 ntBASIC8□□□□□ -1.13
CCDC39Q9UFE4 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CCDC39Q9UFE4 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC8□□□□□ -1.13
CCDC39Q9UFE4 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 SNX18P3-202ENST00000565670 1750 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 MAPK10-270ENST00000641102 3538 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AP000547.3-204ENST00000588548 2523 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 EEF1A1P20-201ENST00000514852 1386 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 RPL10P16-201ENST00000325000 645 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 RN7SKP77-201ENST00000363261 353 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 FTH1P26-201ENST00000406512 701 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 TYMSP1-201ENST00000407851 869 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC073508.1-201ENST00000428866 656 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 VDAC2P3-201ENST00000430995 828 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 NPM1P23-201ENST00000440193 849 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AL359265.1-201ENST00000440296 795 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 SDHCP3-201ENST00000445371 506 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC104982.1-201ENST00000478775 574 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 CREM-242ENST00000490511 469 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC093755.1-201ENST00000512950 1023 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC109635.3-201ENST00000529536 185 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AP000662.1-201ENST00000530952 487 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC104117.5-201ENST00000606195 547 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC113361.1-201ENST00000606683 543 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC007786.3-201ENST00000615154 596 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC018926.1-201ENST00000616335 435 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 BX005040.2-201ENST00000620504 370 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AL136531.3-201ENST00000624378 3658 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC127071.1-201ENST00000624997 712 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms