Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPL31P11-201ENST00000426558 1558 ntBASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 AKAP17BP-201ENST00000431706 2719 ntBASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 AC083806.2-201ENST00000617795 2685 ntBASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 AC007485.2-201ENST00000623493 1667 ntBASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 CASC19-228ENST00000641414 1684 ntBASIC6.3□□□□□ -1.4
CCDC3Q9BQI4 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AC092642.1-201ENST00000392417 425 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 RPSAP65-201ENST00000429660 595 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AMYP1-201ENST00000440059 1023 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 CXCR2P1-202ENST00000443392 1074 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AC026254.2-201ENST00000475295 371 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 SNX18P25-201ENST00000510539 758 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 IGLV3-6-201ENST00000523937 250 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 TRIM51DP-201ENST00000529746 596 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 GLYATL1P2-202ENST00000588046 902 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 BUB1P1-201ENST00000603541 607 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AC025171.4-201ENST00000607250 1047 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 AL391262.1-201ENST00000556558 1992 ntBASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC3Q9BQI4 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 RNU1-46P-201ENST00000384425 164 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 DHFRP2-201ENST00000414224 547 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AL691447.1-201ENST00000419456 387 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AL354707.3-201ENST00000427308 331 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 EMC3-AS1-205ENST00000438698 534 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC011742.2-201ENST00000443818 352 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 OR52I1-201ENST00000450052 1050 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 SEPT14P1-201ENST00000458703 648 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC094085.1-201ENST00000468914 584 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AP002453.1-201ENST00000492327 668 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AP004609.2-201ENST00000532177 190 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC091167.5-201ENST00000605689 894 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AL136097.3-201ENST00000611097 505 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AL445647.2-201ENST00000615170 130 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AC073488.6-201ENST00000632293 754 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms