Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC026826.1-201ENST00000493002 361 ntBASIC8.76□□□□□ -1.01
MSH6P52701 RN7SL466P-201ENST00000497546 295 ntBASIC8.76□□□□□ -1.01
MSH6P52701 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC8.76□□□□□ -1.01
MSH6P52701 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC8.76□□□□□ -1.01
MSH6P52701 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC8.76□□□□□ -1.01
MSH6P52701 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 AC109780.1-201ENST00000451768 1344 ntBASIC8.76□□□□□ -1.01
MSH6P52701 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC8.76□□□□□ -1.01
MSH6P52701 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC8.76□□□□□ -1.01
MSH6P52701 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC8.76□□□□□ -1.01
MSH6P52701 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC8.76□□□□□ -1.01
MSH6P52701 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC8.76□□□□□ -1.01
MSH6P52701 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC8.76□□□□□ -1.01
MSH6P52701 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
MSH6P52701 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
MSH6P52701 SNORA70-201ENST00000384436 135 ntBASIC8.75□□□□□ -1.01
MSH6P52701 AL121835.1-201ENST00000404250 354 ntBASIC8.75□□□□□ -1.01
MSH6P52701 AL354890.1-201ENST00000413730 346 ntBASIC8.75□□□□□ -1.01
MSH6P52701 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 OR13C1P-201ENST00000457612 963 ntBASIC8.75□□□□□ -1.01
MSH6P52701 RN7SL705P-201ENST00000481678 294 ntBASIC8.75□□□□□ -1.01
MSH6P52701 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC8.75□□□□□ -1.01
MSH6P52701 CYCSP22-201ENST00000517555 339 ntBASIC8.75□□□□□ -1.01
MSH6P52701 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 STARD6-202ENST00000577499 696 ntTSL 2 BASIC8.75□□□□□ -1.01
MSH6P52701 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 MIR6748-201ENST00000610433 71 ntBASIC8.75□□□□□ -1.01
MSH6P52701 MRPL57P1-201ENST00000621486 265 ntBASIC8.75□□□□□ -1.01
MSH6P52701 TSHZ2-205ENST00000626626 670 ntBASIC8.75□□□□□ -1.01
MSH6P52701 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC8.75□□□□□ -1.01
MSH6P52701 OR8G3P-202ENST00000641572 1255 ntBASIC8.75□□□□□ -1.01
MSH6P52701 NEPNP-201ENST00000404786 1371 ntBASIC8.75□□□□□ -1.01
MSH6P52701 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC8.75□□□□□ -1.01
MSH6P52701 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC8.75□□□□□ -1.01
MSH6P52701 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
MSH6P52701 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
MSH6P52701 AC027279.4-201ENST00000624371 2072 ntBASIC8.75□□□□□ -1.01
MSH6P52701 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
MSH6P52701 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC8.75□□□□□ -1.01
MSH6P52701 USP46-202ENST00000451218 4622 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
MSH6P52701 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
MSH6P52701 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 RNA5SP156-201ENST00000410250 110 ntBASIC8.74□□□□□ -1.01
MSH6P52701 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC8.74□□□□□ -1.01
MSH6P52701 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
MSH6P52701 SEPT14P12-201ENST00000442280 560 ntBASIC8.74□□□□□ -1.01
MSH6P52701 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 AC092865.4-201ENST00000477936 615 ntBASIC8.74□□□□□ -1.01
MSH6P52701 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 AC027026.1-201ENST00000532323 742 ntBASIC8.74□□□□□ -1.01
MSH6P52701 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 AC005244.1-201ENST00000582566 339 ntBASIC8.74□□□□□ -1.01
MSH6P52701 AL591167.1-201ENST00000607321 456 ntBASIC8.74□□□□□ -1.01
MSH6P52701 AC079395.2-201ENST00000610982 737 ntBASIC8.74□□□□□ -1.01
MSH6P52701 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 AC120057.5-201ENST00000623840 154 ntBASIC8.74□□□□□ -1.01
MSH6P52701 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 AC011379.1-201ENST00000508713 3025 ntBASIC8.74□□□□□ -1.01
MSH6P52701 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC8.74□□□□□ -1.01
MSH6P52701 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC8.74□□□□□ -1.01
MSH6P52701 BTK-209ENST00000618050 2417 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC8.74□□□□□ -1.01
MSH6P52701 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
MSH6P52701 MIR375-201ENST00000362103 64 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC8.73□□□□□ -1.01
MSH6P52701 NPM1P4-201ENST00000414095 812 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RPS7P8-201ENST00000418311 581 ntBASIC8.73□□□□□ -1.01
MSH6P52701 RPL34P3-201ENST00000421454 338 ntBASIC8.73□□□□□ -1.01
MSH6P52701 AC008753.1-201ENST00000423096 284 ntBASIC8.73□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms