Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AC063952.2-201ENST00000498792 1227 ntBASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AC097488.1-201ENST00000507834 756 ntBASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AC022616.7-201ENST00000525383 220 ntBASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AC131212.4-201ENST00000623606 975 ntBASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHGA1Q9Y5H4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 AC004980.1-204ENST00000429707 299 ntBASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHGA1Q9Y5H4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 HMGA1P5-201ENST00000412453 271 ntBASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 CRYGFP-201ENST00000418459 633 ntBASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 AC011506.1-201ENST00000474329 610 ntBASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 FAM87A-204ENST00000613235 858 ntBASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PCDHGA1Q9Y5H4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 AC244015.2-201ENST00000616358 1861 ntBASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 YBX1P10-201ENST00000444752 975 ntBASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 LINC00565-201ENST00000562710 2331 ntBASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHGA1Q9Y5H4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 FAM8A6P-201ENST00000407496 1135 ntBASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms