Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LIME1Q9H400 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
LIME1Q9H400 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
LIME1Q9H400 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.38
LIME1Q9H400 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.39■□□□□ 0.38
LIME1Q9H400 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.39■□□□□ 0.37
LIME1Q9H400 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.39■□□□□ 0.37
LIME1Q9H400 AL390719.1-204ENST00000412397 1219 ntBASIC17.39■□□□□ 0.37
LIME1Q9H400 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.39■□□□□ 0.37
LIME1Q9H400 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.39■□□□□ 0.37
LIME1Q9H400 AL049597.2-201ENST00000565575 961 ntBASIC17.39■□□□□ 0.37
LIME1Q9H400 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.39■□□□□ 0.37
LIME1Q9H400 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.39■□□□□ 0.37
LIME1Q9H400 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.39■□□□□ 0.37
LIME1Q9H400 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.39■□□□□ 0.37
LIME1Q9H400 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
LIME1Q9H400 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LIME1Q9H400 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.39■□□□□ 0.37
LIME1Q9H400 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.39■□□□□ 0.37
LIME1Q9H400 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.39■□□□□ 0.37
LIME1Q9H400 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIME1Q9H400 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.38■□□□□ 0.37
LIME1Q9H400 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 AL355355.2-201ENST00000442321 338 ntBASIC17.38■□□□□ 0.37
LIME1Q9H400 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.38■□□□□ 0.37
LIME1Q9H400 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.38■□□□□ 0.37
LIME1Q9H400 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.38■□□□□ 0.37
LIME1Q9H400 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 AC121338.2-201ENST00000622535 1744 ntBASIC17.38■□□□□ 0.37
LIME1Q9H400 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIME1Q9H400 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.38■□□□□ 0.37
LIME1Q9H400 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.37■□□□□ 0.37
LIME1Q9H400 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
LIME1Q9H400 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.37■□□□□ 0.37
LIME1Q9H400 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LIME1Q9H400 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LIME1Q9H400 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
LIME1Q9H400 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.37■□□□□ 0.37
LIME1Q9H400 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.37■□□□□ 0.37
LIME1Q9H400 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LIME1Q9H400 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.37■□□□□ 0.37
LIME1Q9H400 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LIME1Q9H400 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.37■□□□□ 0.37
LIME1Q9H400 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.37■□□□□ 0.37
LIME1Q9H400 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIME1Q9H400 AC007952.6-201ENST00000573168 2673 ntBASIC17.36■□□□□ 0.37
LIME1Q9H400 AC003957.1-201ENST00000625108 2673 ntBASIC17.36■□□□□ 0.37
LIME1Q9H400 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.36■□□□□ 0.37
LIME1Q9H400 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
LIME1Q9H400 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIME1Q9H400 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIME1Q9H400 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.36■□□□□ 0.37
LIME1Q9H400 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.36■□□□□ 0.37
LIME1Q9H400 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms