Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TREX1-205ENST00000625293 1783 ntBASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 KRT18P68-201ENST00000392293 1000 ntBASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 CYP2T3P-201ENST00000601990 817 ntBASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM56Q9BRZ2 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.14■□□□□ 0.82
TRIM56Q9BRZ2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM56Q9BRZ2 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM56Q9BRZ2 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM56Q9BRZ2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 KRT17P1-201ENST00000399211 1546 ntBASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM56Q9BRZ2 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 AC007322.1-201ENST00000426983 750 ntBASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 AC100791.3-201ENST00000617619 330 ntBASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM56Q9BRZ2 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 AC010980.2-201ENST00000587099 1412 ntBASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM56Q9BRZ2 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 AC231657.2-201ENST00000624556 255 ntBASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM56Q9BRZ2 KRT8P17-201ENST00000453110 1448 ntBASIC20.1■□□□□ 0.81
TRIM56Q9BRZ2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM56Q9BRZ2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TRIM56Q9BRZ2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM56Q9BRZ2 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM56Q9BRZ2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms