Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC25A1P2-201ENST00000430693 912 ntBASIC19.71■□□□□ 0.75
VPS13AQ96RL7 AC007663.1-201ENST00000438948 1240 ntBASIC19.71■□□□□ 0.75
VPS13AQ96RL7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.7■□□□□ 0.74
VPS13AQ96RL7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.7■□□□□ 0.74
VPS13AQ96RL7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS13AQ96RL7 AC092338.2-201ENST00000568827 1415 ntBASIC19.7■□□□□ 0.74
VPS13AQ96RL7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 AL022342.1-201ENST00000400363 863 ntBASIC19.69■□□□□ 0.74
VPS13AQ96RL7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 AC111152.3-201ENST00000569699 673 ntBASIC19.69■□□□□ 0.74
VPS13AQ96RL7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS13AQ96RL7 HYMAI.1-201ENST00000620949 238 ntBASIC19.69■□□□□ 0.74
VPS13AQ96RL7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 AC011484.1-201ENST00000377652 1995 ntBASIC19.68■□□□□ 0.74
VPS13AQ96RL7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
VPS13AQ96RL7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 UNC93B7-201ENST00000509439 705 ntBASIC19.67■□□□□ 0.74
VPS13AQ96RL7 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 MFAP1P1-201ENST00000442257 1255 ntBASIC19.67■□□□□ 0.74
VPS13AQ96RL7 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS13AQ96RL7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13AQ96RL7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms