Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RPS4Y2Q8TD47 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 AC016405.3-201ENST00000607710 860 ntBASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 AC100791.3-201ENST00000617619 330 ntBASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 AC010536.3-201ENST00000620306 533 ntBASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RPS4Y2Q8TD47 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RPS4Y2Q8TD47 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RPS4Y2Q8TD47 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 MCRIP2P1-201ENST00000394346 511 ntBASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RPS4Y2Q8TD47 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms