Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 AC093484.2-201ENST00000580996 2166 ntBASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLHC1Q8NHS4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLHC1Q8NHS4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 AC005181.1-201ENST00000604782 1256 ntBASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLHC1Q8NHS4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 AC009237.14-201ENST00000609975 1594 ntBASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CLHC1Q8NHS4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 IKBKGP1-201ENST00000612193 1073 ntBASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 AL589743.5-201ENST00000616611 1050 ntBASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 OR10C1-204ENST00000622521 1039 ntBASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLHC1Q8NHS4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms