Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CCDC28AQ8IWP9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC28AQ8IWP9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 SNX5-217ENST00000606557 1087 ntBASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC28AQ8IWP9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC28AQ8IWP9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC28AQ8IWP9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms