Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PCDHA12-202ENST00000613593 2588 ntBASIC12.42□□□□□ -0.42
LINC00643Q86TS7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00643Q86TS7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 OR6D1P-203ENST00000641209 4860 ntBASIC12.41□□□□□ -0.42
LINC00643Q86TS7 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
LINC00643Q86TS7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 AC092720.2-201ENST00000602388 1665 ntBASIC12.4□□□□□ -0.42
LINC00643Q86TS7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00643Q86TS7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00643Q86TS7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00643Q86TS7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00643Q86TS7 AC008894.3-201ENST00000624324 3103 ntBASIC12.4□□□□□ -0.43
LINC00643Q86TS7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 HLA-V-202ENST00000446817 847 ntBASIC12.39□□□□□ -0.43
LINC00643Q86TS7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00643Q86TS7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms