Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 MFAP1P1-201ENST00000442257 1255 ntBASIC21.13■□□□□ 0.97
CHD9Q3L8U1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.13■□□□□ 0.97
CHD9Q3L8U1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHD9Q3L8U1 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 AP000692.2-201ENST00000608391 879 ntBASIC21.12■□□□□ 0.97
CHD9Q3L8U1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.12■□□□□ 0.97
CHD9Q3L8U1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHD9Q3L8U1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 HYMAI.1-201ENST00000620949 238 ntBASIC21.1■□□□□ 0.97
CHD9Q3L8U1 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 AL441883.1-201ENST00000566170 1045 ntBASIC21.1■□□□□ 0.97
CHD9Q3L8U1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.1■□□□□ 0.97
CHD9Q3L8U1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD9Q3L8U1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 VENTXP5-201ENST00000523979 775 ntBASIC21.08■□□□□ 0.97
CHD9Q3L8U1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 AL691432.3-201ENST00000621860 400 ntBASIC21.08■□□□□ 0.97
CHD9Q3L8U1 AP006587.1-201ENST00000534129 1502 ntBASIC21.08■□□□□ 0.97
CHD9Q3L8U1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD9Q3L8U1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.08■□□□□ 0.96
CHD9Q3L8U1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.08■□□□□ 0.96
CHD9Q3L8U1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CHD9Q3L8U1 AC012313.10-201ENST00000623509 926 ntBASIC21.08■□□□□ 0.96
CHD9Q3L8U1 MIR2861-201ENST00000636310 90 ntBASIC21.08■□□□□ 0.96
CHD9Q3L8U1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CHD9Q3L8U1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 KRT18P16-201ENST00000510337 1294 ntBASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms