Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC12.35□□□□□ -0.43
HSPG2P98160 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
HSPG2P98160 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC12.35□□□□□ -0.43
HSPG2P98160 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC12.35□□□□□ -0.43
HSPG2P98160 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC12.35□□□□□ -0.43
HSPG2P98160 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC12.35□□□□□ -0.43
HSPG2P98160 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC12.35□□□□□ -0.43
HSPG2P98160 AP002414.4-201ENST00000589764 1148 ntBASIC12.35□□□□□ -0.43
HSPG2P98160 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.34□□□□□ -0.43
HSPG2P98160 AL512604.3-201ENST00000569583 964 ntBASIC12.34□□□□□ -0.43
HSPG2P98160 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 NME4-212ENST00000621774 904 ntTSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 KRT18P1-202ENST00000452408 1331 ntBASIC12.34□□□□□ -0.43
HSPG2P98160 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HSPG2P98160 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
HSPG2P98160 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC12.34□□□□□ -0.43
HSPG2P98160 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HSPG2P98160 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.34□□□□□ -0.43
HSPG2P98160 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC12.34□□□□□ -0.43
HSPG2P98160 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC12.34□□□□□ -0.43
HSPG2P98160 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HSPG2P98160 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HSPG2P98160 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.34□□□□□ -0.43
HSPG2P98160 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HSPG2P98160 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
HSPG2P98160 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HSPG2P98160 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HSPG2P98160 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC12.33□□□□□ -0.43
HSPG2P98160 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HSPG2P98160 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC12.33□□□□□ -0.43
HSPG2P98160 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 KRT18P13-201ENST00000400056 1290 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC12.33□□□□□ -0.44
HSPG2P98160 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC12.33□□□□□ -0.44
HSPG2P98160 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.33□□□□□ -0.44
HSPG2P98160 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC12.33□□□□□ -0.44
HSPG2P98160 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 AC004951.3-201ENST00000418645 1148 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC12.33□□□□□ -0.44
HSPG2P98160 AL031432.5-201ENST00000641059 760 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC12.33□□□□□ -0.44
HSPG2P98160 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 AP000523.1-201ENST00000398242 1049 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 TSPY17P-201ENST00000450329 467 ntBASIC12.33□□□□□ -0.44
HSPG2P98160 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC12.33□□□□□ -0.44
HSPG2P98160 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC12.33□□□□□ -0.44
HSPG2P98160 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HSPG2P98160 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HSPG2P98160 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC12.32□□□□□ -0.44
HSPG2P98160 AL645929.1-201ENST00000420084 975 ntBASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms