Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 KRT126P-201ENST00000549467 1181 ntBASIC17.05■□□□□ 0.32
ABCA4P78363 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.05■□□□□ 0.32
ABCA4P78363 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.05■□□□□ 0.32
ABCA4P78363 CR392000.1-201ENST00000624770 1228 ntBASIC17.05■□□□□ 0.32
ABCA4P78363 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA4P78363 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA4P78363 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ABCA4P78363 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA4P78363 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA4P78363 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.05■□□□□ 0.32
ABCA4P78363 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.05■□□□□ 0.32
ABCA4P78363 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
ABCA4P78363 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 LINC00565-201ENST00000562710 2331 ntBASIC17.05■□□□□ 0.32
ABCA4P78363 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ABCA4P78363 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
ABCA4P78363 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 AC087388.1-201ENST00000571370 1112 ntBASIC17.04■□□□□ 0.32
ABCA4P78363 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.04■□□□□ 0.32
ABCA4P78363 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.04■□□□□ 0.32
ABCA4P78363 FP700111.2-201ENST00000619190 1892 ntBASIC17.04■□□□□ 0.32
ABCA4P78363 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.04■□□□□ 0.32
ABCA4P78363 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA4P78363 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
ABCA4P78363 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.04■□□□□ 0.32
ABCA4P78363 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
ABCA4P78363 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ABCA4P78363 AC091076.1-201ENST00000610741 619 ntBASIC17.03■□□□□ 0.32
ABCA4P78363 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA4P78363 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA4P78363 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ECEL1P1-201ENST00000373592 1742 ntBASIC17.03■□□□□ 0.32
ABCA4P78363 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA4P78363 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA4P78363 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA4P78363 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCA4P78363 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCA4P78363 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 TPM4P1-201ENST00000436100 807 ntBASIC17.02■□□□□ 0.32
ABCA4P78363 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ABCA4P78363 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCA4P78363 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA4P78363 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA4P78363 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA4P78363 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA4P78363 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA4P78363 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA4P78363 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.01■□□□□ 0.31
ABCA4P78363 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
ABCA4P78363 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
ABCA4P78363 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.01■□□□□ 0.31
ABCA4P78363 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ABCA4P78363 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms