Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 POU5F1P4-201ENST00000413175 1085 ntBASIC14.85□□□□□ -0.03
FOXA3P55318 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA3P55318 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA3P55318 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA3P55318 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
FOXA3P55318 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FOXA3P55318 KRT8P36-201ENST00000489121 1440 ntBASIC14.84□□□□□ -0.03
FOXA3P55318 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
FOXA3P55318 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
FOXA3P55318 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA3P55318 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
FOXA3P55318 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA3P55318 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC14.84□□□□□ -0.03
FOXA3P55318 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA3P55318 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
FOXA3P55318 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA3P55318 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
FOXA3P55318 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA3P55318 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA3P55318 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC14.83□□□□□ -0.03
FOXA3P55318 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
FOXA3P55318 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.83□□□□□ -0.03
FOXA3P55318 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 AL512631.2-201ENST00000604634 923 ntBASIC14.83□□□□□ -0.04
FOXA3P55318 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA3P55318 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA3P55318 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
FOXA3P55318 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA3P55318 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
FOXA3P55318 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
FOXA3P55318 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
FOXA3P55318 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
FOXA3P55318 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
FOXA3P55318 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA3P55318 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA3P55318 AL032819.2-201ENST00000624543 2162 ntBASIC14.83□□□□□ -0.04
FOXA3P55318 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA3P55318 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 AC009237.14-201ENST00000609975 1594 ntBASIC14.82□□□□□ -0.04
FOXA3P55318 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
FOXA3P55318 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
FOXA3P55318 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
FOXA3P55318 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA3P55318 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 AC008175.2-201ENST00000612840 297 ntBASIC14.82□□□□□ -0.04
FOXA3P55318 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA3P55318 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA3P55318 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
FOXA3P55318 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms