Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
CLTCL1P53675 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CLTCL1P53675 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC28.5■■■□□ 2.15
CLTCL1P53675 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC28.5■■■□□ 2.15
CLTCL1P53675 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
CLTCL1P53675 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
CLTCL1P53675 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC28.5■■■□□ 2.15
CLTCL1P53675 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC28.5■■■□□ 2.15
CLTCL1P53675 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CLTCL1P53675 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC28.5■■■□□ 2.15
CLTCL1P53675 AC005363.2-201ENST00000618631 242 ntBASIC28.5■■■□□ 2.15
CLTCL1P53675 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC28.5■■■□□ 2.15
CLTCL1P53675 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CLTCL1P53675 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC28.49■■■□□ 2.15
CLTCL1P53675 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC28.49■■■□□ 2.15
CLTCL1P53675 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CLTCL1P53675 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC28.49■■■□□ 2.15
CLTCL1P53675 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
CLTCL1P53675 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
CLTCL1P53675 TMA16-209ENST00000513272 803 ntTSL 2 BASIC28.49■■■□□ 2.15
CLTCL1P53675 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC28.48■■■□□ 2.15
CLTCL1P53675 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
CLTCL1P53675 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC28.48■■■□□ 2.15
CLTCL1P53675 FDX2-206ENST00000492239 773 ntTSL 2 BASIC28.48■■■□□ 2.15
CLTCL1P53675 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC28.48■■■□□ 2.15
CLTCL1P53675 AC006011.2-201ENST00000621313 1158 ntBASIC28.48■■■□□ 2.15
CLTCL1P53675 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC28.48■■■□□ 2.15
CLTCL1P53675 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CLTCL1P53675 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
CLTCL1P53675 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC28.47■■■□□ 2.15
CLTCL1P53675 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC28.47■■■□□ 2.15
CLTCL1P53675 AL049597.2-201ENST00000565575 961 ntBASIC28.47■■■□□ 2.15
CLTCL1P53675 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
CLTCL1P53675 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC28.47■■■□□ 2.15
CLTCL1P53675 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC28.47■■■□□ 2.15
CLTCL1P53675 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
CLTCL1P53675 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 KRT18P22-201ENST00000402024 1347 ntBASIC28.46■■■□□ 2.15
CLTCL1P53675 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 TMEM179-206ENST00000616017 1645 ntBASIC28.46■■■□□ 2.15
CLTCL1P53675 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC28.46■■■□□ 2.15
CLTCL1P53675 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 CFL2-205ENST00000555765 632 ntTSL 2 BASIC28.46■■■□□ 2.15
CLTCL1P53675 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
CLTCL1P53675 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
CLTCL1P53675 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
CLTCL1P53675 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC28.45■■■□□ 2.15
CLTCL1P53675 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC28.45■■■□□ 2.15
CLTCL1P53675 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CLTCL1P53675 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC28.45■■■□□ 2.14
CLTCL1P53675 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC28.45■■■□□ 2.14
CLTCL1P53675 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
CLTCL1P53675 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.14
CLTCL1P53675 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC28.45■■■□□ 2.14
CLTCL1P53675 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC28.45■■■□□ 2.14
CLTCL1P53675 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
CLTCL1P53675 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 INGX-201ENST00000359239 846 ntBASIC28.44■■■□□ 2.14
CLTCL1P53675 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC28.44■■■□□ 2.14
CLTCL1P53675 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC28.44■■■□□ 2.14
CLTCL1P53675 Z85996.1-201ENST00000494644 937 ntBASIC28.44■■■□□ 2.14
CLTCL1P53675 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC28.44■■■□□ 2.14
CLTCL1P53675 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC28.44■■■□□ 2.14
CLTCL1P53675 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC28.44■■■□□ 2.14
CLTCL1P53675 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC28.44■■■□□ 2.14
CLTCL1P53675 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC28.44■■■□□ 2.14
CLTCL1P53675 MOK-225ENST00000522867 1883 ntTSL 5 BASIC28.44■■■□□ 2.14
CLTCL1P53675 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CLTCL1P53675 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms