Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR4758-201ENST00000577688 71 ntBASIC16.09■□□□□ 0.17
CDX1P47902 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.09■□□□□ 0.17
CDX1P47902 AC016405.3-201ENST00000607710 860 ntBASIC16.09■□□□□ 0.17
CDX1P47902 FAM21FP-204ENST00000608637 956 ntBASIC16.09■□□□□ 0.17
CDX1P47902 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
CDX1P47902 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.09■□□□□ 0.17
CDX1P47902 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.09■□□□□ 0.17
CDX1P47902 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDX1P47902 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CDX1P47902 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
CDX1P47902 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CDX1P47902 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
CDX1P47902 FZD10-202ENST00000539839 3282 ntBASIC16.08■□□□□ 0.17
CDX1P47902 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.08■□□□□ 0.16
CDX1P47902 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.08■□□□□ 0.16
CDX1P47902 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.08■□□□□ 0.16
CDX1P47902 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.08■□□□□ 0.16
CDX1P47902 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.08■□□□□ 0.16
CDX1P47902 AC133041.1-202ENST00000642053 222 ntBASIC16.08■□□□□ 0.16
CDX1P47902 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CDX1P47902 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDX1P47902 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.07■□□□□ 0.16
CDX1P47902 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.07■□□□□ 0.16
CDX1P47902 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.07■□□□□ 0.16
CDX1P47902 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CDX1P47902 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC16.07■□□□□ 0.16
CDX1P47902 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CDX1P47902 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.07■□□□□ 0.16
CDX1P47902 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.07■□□□□ 0.16
CDX1P47902 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.07■□□□□ 0.16
CDX1P47902 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CDX1P47902 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDX1P47902 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 AC007613.1-201ENST00000572811 2597 ntBASIC16.06■□□□□ 0.16
CDX1P47902 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.06■□□□□ 0.16
CDX1P47902 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.06■□□□□ 0.16
CDX1P47902 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 AC010980.2-201ENST00000587099 1412 ntBASIC16.06■□□□□ 0.16
CDX1P47902 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CDX1P47902 MIPEPP3-201ENST00000412105 444 ntBASIC16.06■□□□□ 0.16
CDX1P47902 AC069152.1-201ENST00000438030 544 ntBASIC16.06■□□□□ 0.16
CDX1P47902 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.06■□□□□ 0.16
CDX1P47902 AC093787.1-201ENST00000450396 207 ntBASIC16.06■□□□□ 0.16
CDX1P47902 AL138781.1-201ENST00000566567 1274 ntBASIC16.06■□□□□ 0.16
CDX1P47902 AC100791.3-201ENST00000617619 330 ntBASIC16.06■□□□□ 0.16
CDX1P47902 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDX1P47902 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CDX1P47902 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDX1P47902 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CDX1P47902 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CDX1P47902 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.05■□□□□ 0.16
CDX1P47902 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDX1P47902 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms