Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.02■□□□□ 0.8
HADHAP40939 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.02■□□□□ 0.8
HADHAP40939 AL138781.1-201ENST00000566567 1274 ntBASIC20.02■□□□□ 0.8
HADHAP40939 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.02■□□□□ 0.8
HADHAP40939 AC133041.1-202ENST00000642053 222 ntBASIC20.02■□□□□ 0.8
HADHAP40939 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.02■□□□□ 0.8
HADHAP40939 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.02■□□□□ 0.8
HADHAP40939 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HADHAP40939 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HADHAP40939 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HADHAP40939 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HADHAP40939 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.02■□□□□ 0.79
HADHAP40939 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.02■□□□□ 0.79
HADHAP40939 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HADHAP40939 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
HADHAP40939 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.01■□□□□ 0.79
HADHAP40939 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.01■□□□□ 0.79
HADHAP40939 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.01■□□□□ 0.79
HADHAP40939 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.01■□□□□ 0.79
HADHAP40939 AC142086.2-201ENST00000569753 217 ntBASIC20.01■□□□□ 0.79
HADHAP40939 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.01■□□□□ 0.79
HADHAP40939 AL691432.2-201ENST00000607222 2038 ntBASIC20.01■□□□□ 0.79
HADHAP40939 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HADHAP40939 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HADHAP40939 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HADHAP40939 KRT16P6-202ENST00000425692 1426 ntBASIC20.01■□□□□ 0.79
HADHAP40939 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HADHAP40939 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
HADHAP40939 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.01■□□□□ 0.79
HADHAP40939 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20■□□□□ 0.79
HADHAP40939 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
HADHAP40939 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20■□□□□ 0.79
HADHAP40939 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20■□□□□ 0.79
HADHAP40939 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
HADHAP40939 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20■□□□□ 0.79
HADHAP40939 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20■□□□□ 0.79
HADHAP40939 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
HADHAP40939 MYC-209ENST00000641252 345 ntBASIC20■□□□□ 0.79
HADHAP40939 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20■□□□□ 0.79
HADHAP40939 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 AC125437.2-201ENST00000625180 2167 ntBASIC20■□□□□ 0.79
HADHAP40939 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
HADHAP40939 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HADHAP40939 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HADHAP40939 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 AC069152.1-201ENST00000438030 544 ntBASIC19.99■□□□□ 0.79
HADHAP40939 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.99■□□□□ 0.79
HADHAP40939 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.99■□□□□ 0.79
HADHAP40939 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.99■□□□□ 0.79
HADHAP40939 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.99■□□□□ 0.79
HADHAP40939 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.99■□□□□ 0.79
HADHAP40939 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
HADHAP40939 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HADHAP40939 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms