Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL18A1P39060 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL18A1P39060 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL18A1P39060 SAPCD2P2-201ENST00000431719 1174 ntBASIC26.34■■□□□ 1.81
COL18A1P39060 AC008040.2-201ENST00000461049 708 ntBASIC26.34■■□□□ 1.81
COL18A1P39060 Z85996.1-201ENST00000494644 937 ntBASIC26.34■■□□□ 1.81
COL18A1P39060 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL18A1P39060 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL18A1P39060 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
COL18A1P39060 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL18A1P39060 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC26.33■■□□□ 1.81
COL18A1P39060 COPS8-203ENST00000409334 794 ntTSL 5 BASIC26.33■■□□□ 1.81
COL18A1P39060 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL18A1P39060 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC26.33■■□□□ 1.81
COL18A1P39060 AC011298.2-201ENST00000617989 482 ntBASIC26.33■■□□□ 1.81
COL18A1P39060 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL18A1P39060 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.33■■□□□ 1.81
COL18A1P39060 PHGDH-210ENST00000641115 1638 ntBASIC26.33■■□□□ 1.81
COL18A1P39060 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL18A1P39060 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL18A1P39060 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
COL18A1P39060 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.8
COL18A1P39060 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.8
COL18A1P39060 TOLLIP-AS1-201ENST00000530897 939 ntBASIC26.33■■□□□ 1.8
COL18A1P39060 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC26.33■■□□□ 1.8
COL18A1P39060 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
COL18A1P39060 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC26.32■■□□□ 1.8
COL18A1P39060 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC26.32■■□□□ 1.8
COL18A1P39060 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC26.32■■□□□ 1.8
COL18A1P39060 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
COL18A1P39060 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
COL18A1P39060 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
COL18A1P39060 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 SLC25A1P4-201ENST00000567977 778 ntBASIC26.32■■□□□ 1.8
COL18A1P39060 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC26.32■■□□□ 1.8
COL18A1P39060 FBXW4P1-201ENST00000426721 2239 ntBASIC26.32■■□□□ 1.8
COL18A1P39060 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL18A1P39060 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
COL18A1P39060 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.31■■□□□ 1.8
COL18A1P39060 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
COL18A1P39060 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.31■■□□□ 1.8
COL18A1P39060 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL18A1P39060 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC26.3■■□□□ 1.8
COL18A1P39060 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.3■■□□□ 1.8
COL18A1P39060 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL18A1P39060 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL18A1P39060 AC004951.3-201ENST00000418645 1148 ntBASIC26.3■■□□□ 1.8
COL18A1P39060 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL18A1P39060 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
COL18A1P39060 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL18A1P39060 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL18A1P39060 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
COL18A1P39060 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC26.28■■□□□ 1.8
COL18A1P39060 FAM207BP-201ENST00000447172 505 ntBASIC26.28■■□□□ 1.8
COL18A1P39060 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC26.28■■□□□ 1.8
COL18A1P39060 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.28■■□□□ 1.8
COL18A1P39060 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
COL18A1P39060 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC26.28■■□□□ 1.8
COL18A1P39060 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
COL18A1P39060 LINC01238-205ENST00000567549 1107 ntBASIC26.28■■□□□ 1.8
COL18A1P39060 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC26.28■■□□□ 1.8
COL18A1P39060 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC26.28■■□□□ 1.8
COL18A1P39060 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC26.28■■□□□ 1.8
COL18A1P39060 AC010653.2-201ENST00000623505 997 ntBASIC26.28■■□□□ 1.8
COL18A1P39060 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL18A1P39060 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL18A1P39060 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL18A1P39060 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
COL18A1P39060 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL18A1P39060 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL18A1P39060 BET1L-202ENST00000332865 533 ntTSL 5 BASIC26.27■■□□□ 1.8
COL18A1P39060 ANKRD20A18P-201ENST00000359341 492 ntBASIC26.27■■□□□ 1.8
COL18A1P39060 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC26.27■■□□□ 1.8
COL18A1P39060 DUSP5P1-201ENST00000441325 1139 ntBASIC26.27■■□□□ 1.8
COL18A1P39060 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC26.27■■□□□ 1.8
COL18A1P39060 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC26.27■■□□□ 1.8
COL18A1P39060 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.27■■□□□ 1.8
COL18A1P39060 AC139887.4-201ENST00000607877 719 ntBASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms