Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC25.15■■□□□ 1.62
COL5A3P25940 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
COL5A3P25940 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL5A3P25940 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC25.15■■□□□ 1.62
COL5A3P25940 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL5A3P25940 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.15■■□□□ 1.62
COL5A3P25940 Z85996.1-201ENST00000494644 937 ntBASIC25.15■■□□□ 1.62
COL5A3P25940 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
COL5A3P25940 LINC01238-205ENST00000567549 1107 ntBASIC25.15■■□□□ 1.62
COL5A3P25940 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC25.15■■□□□ 1.62
COL5A3P25940 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
COL5A3P25940 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL5A3P25940 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC25.15■■□□□ 1.62
COL5A3P25940 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
COL5A3P25940 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL5A3P25940 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC25.15■■□□□ 1.62
COL5A3P25940 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC25.15■■□□□ 1.62
COL5A3P25940 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
COL5A3P25940 SLC25A1P4-201ENST00000567977 778 ntBASIC25.15■■□□□ 1.62
COL5A3P25940 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.14■■□□□ 1.62
COL5A3P25940 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
COL5A3P25940 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
COL5A3P25940 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25.14■■□□□ 1.62
COL5A3P25940 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC25.14■■□□□ 1.61
COL5A3P25940 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
COL5A3P25940 COPS8-203ENST00000409334 794 ntTSL 5 BASIC25.14■■□□□ 1.61
COL5A3P25940 SAPCD2P2-201ENST00000431719 1174 ntBASIC25.14■■□□□ 1.61
COL5A3P25940 AC091390.4-202ENST00000476426 537 ntBASIC25.14■■□□□ 1.61
COL5A3P25940 AP000692.2-201ENST00000608391 879 ntBASIC25.14■■□□□ 1.61
COL5A3P25940 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.14■■□□□ 1.61
COL5A3P25940 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
COL5A3P25940 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
COL5A3P25940 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL5A3P25940 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL5A3P25940 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
COL5A3P25940 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL5A3P25940 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
COL5A3P25940 FAM207BP-201ENST00000447172 505 ntBASIC25.13■■□□□ 1.61
COL5A3P25940 TOLLIP-AS1-201ENST00000530897 939 ntBASIC25.13■■□□□ 1.61
COL5A3P25940 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.13■■□□□ 1.61
COL5A3P25940 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC25.13■■□□□ 1.61
COL5A3P25940 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.13■■□□□ 1.61
COL5A3P25940 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL5A3P25940 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL5A3P25940 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL5A3P25940 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC25.12■■□□□ 1.61
COL5A3P25940 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 AC004951.3-201ENST00000418645 1148 ntBASIC25.12■■□□□ 1.61
COL5A3P25940 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 AC083849.1-201ENST00000615227 514 ntBASIC25.12■■□□□ 1.61
COL5A3P25940 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
COL5A3P25940 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.12■■□□□ 1.61
COL5A3P25940 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL5A3P25940 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC25.11■■□□□ 1.61
COL5A3P25940 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.11■■□□□ 1.61
COL5A3P25940 CYGB-204ENST00000589342 815 ntTSL 3 BASIC25.11■■□□□ 1.61
COL5A3P25940 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
COL5A3P25940 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL5A3P25940 AL117328.2-201ENST00000624617 1940 ntBASIC25.1■■□□□ 1.61
COL5A3P25940 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
COL5A3P25940 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
COL5A3P25940 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 GXYLT1P6-201ENST00000456472 1187 ntBASIC25.1■■□□□ 1.61
COL5A3P25940 AL359075.1-203ENST00000462729 1002 ntBASIC25.1■■□□□ 1.61
COL5A3P25940 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.1■■□□□ 1.61
COL5A3P25940 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC25.1■■□□□ 1.61
COL5A3P25940 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 AC010653.2-201ENST00000623505 997 ntBASIC25.1■■□□□ 1.61
COL5A3P25940 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC25.1■■□□□ 1.61
COL5A3P25940 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL5A3P25940 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC25.09■■□□□ 1.61
COL5A3P25940 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 DUSP5P1-201ENST00000441325 1139 ntBASIC25.09■■□□□ 1.61
COL5A3P25940 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
COL5A3P25940 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL5A3P25940 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms