Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.88■□□□□ 0.133e-8■■■□□ 15.5
YBX3P16989 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.77■□□□□ 0.123e-8■■■□□ 15.5
YBX3P16989 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.013e-8■■■□□ 15.5
YBX3P16989 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.96□□□□□ -0.023e-8■■■□□ 15.5
YBX3P16989 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)14.58□□□□□ -0.083e-8■■■□□ 15.5
YBX3P16989 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC13.45□□□□□ -0.263e-8■■■□□ 15.5
YBX3P16989 AC026464.4-201ENST00000570054 1284 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.092e-8■■■□□ 15.5
YBX3P16989 VPS4A-201ENST00000254950 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.392e-8■■■□□ 15.5
YBX3P16989 ACSL4-212ENST00000514500 696 ntTSL 518.61■□□□□ 0.571e-10■■■□□ 15.5
YBX3P16989 ACSL4-209ENST00000505075 390 ntTSL 35.94□□□□□ -1.461e-10■■■□□ 15.5
YBX3P16989 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC33.91■■■■□ 3.021e-12■■■□□ 15.5
YBX3P16989 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.561e-12■■■□□ 15.5
YBX3P16989 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.783e-7■■■□□ 15.5
YBX3P16989 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.393e-7■■■□□ 15.5
YBX3P16989 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.473e-7■■■□□ 15.5
YBX3P16989 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.081e-9■■■□□ 15.5
YBX3P16989 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.011e-9■■■□□ 15.5
YBX3P16989 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.29■□□□□ 0.841e-9■■■□□ 15.5
YBX3P16989 STARD3NL-207ENST00000471550 3653 ntTSL 210.77□□□□□ -0.691e-9■■■□□ 15.5
YBX3P16989 COPS6-208ENST00000474823 752 ntTSL 213.3□□□□□ -0.289e-7■■■□□ 15.5
YBX3P16989 ATIC-210ENST00000459796 847 ntTSL 316.53■□□□□ 0.242e-11■■■□□ 15.5
YBX3P16989 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC17.16■□□□□ 0.344e-9■■■□□ 15.5
YBX3P16989 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.314e-9■■■□□ 15.5
YBX3P16989 PRKAR2A-204ENST00000437821 627 ntTSL 58.02□□□□□ -1.132e-7■■■□□ 15.5
YBX3P16989 RPS2-206ENST00000527302 719 ntTSL 333.62■■■□□ 2.972e-62■■■□□ 15.5
YBX3P16989 RPS2-204ENST00000526908 638 ntTSL 227.71■■■□□ 2.032e-62■■■□□ 15.5
YBX3P16989 RPS2-216ENST00000534461 734 ntTSL 224.76■■□□□ 1.552e-62■■■□□ 15.5
YBX3P16989 PIN1-206ENST00000587625 878 ntTSL 2 BASIC23.53■■□□□ 1.363e-9■■■□□ 15.5
YBX3P16989 PIN1-203ENST00000585442 705 ntTSL 521.99■■□□□ 1.113e-9■■■□□ 15.5
YBX3P16989 PIN1-205ENST00000586352 755 ntTSL 321.35■■□□□ 1.013e-9■■■□□ 15.5
YBX3P16989 PIN1-208ENST00000589058 536 ntTSL 318.55■□□□□ 0.563e-9■■■□□ 15.5
YBX3P16989 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.99■□□□□ 0.312e-8■■■□□ 15.5
YBX3P16989 TOX4-205ENST00000455393 2000 ntTSL 215.93■□□□□ 0.145e-10■■■□□ 15.5
YBX3P16989 TOX4-211ENST00000613005 3633 ntTSL 210.78□□□□□ -0.685e-10■■■□□ 15.5
YBX3P16989 TOX4-203ENST00000448790 4534 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.775e-10■■■□□ 15.5
YBX3P16989 TOX4-212ENST00000613569 4711 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.865e-10■■■□□ 15.5
YBX3P16989 TOX4-207ENST00000463119 585 ntTSL 25.25□□□□□ -1.575e-10■■■□□ 15.5
YBX3P16989 CYTH3-206ENST00000478541 505 ntTSL 221.13■□□□□ 0.973e-8■■■□□ 15.5
YBX3P16989 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.023e-8■■■□□ 15.5
YBX3P16989 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.023e-8■■■□□ 15.5
YBX3P16989 HMBOX1-215ENST00000560599 1426 ntTSL 520.74■□□□□ 0.913e-9■■■□□ 15.5
YBX3P16989 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.81■□□□□ 0.443e-9■■■□□ 15.5
YBX3P16989 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.69■□□□□ 0.263e-9■■■□□ 15.5
YBX3P16989 HMBOX1-213ENST00000560269 569 ntTSL 416.6■□□□□ 0.253e-9■■■□□ 15.5
YBX3P16989 HMBOX1-208ENST00000521516 2216 ntTSL 211.73□□□□□ -0.533e-9■■■□□ 15.5
YBX3P16989 HMBOX1-214ENST00000560357 979 ntTSL 28.61□□□□□ -1.033e-9■■■□□ 15.5
YBX3P16989 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC8.16□□□□□ -1.13e-9■■■□□ 15.5
YBX3P16989 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC7.72□□□□□ -1.173e-9■■■□□ 15.5
YBX3P16989 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.6□□□□□ -1.513e-9■■■□□ 15.5
YBX3P16989 MAST1-205ENST00000590204 398 ntTSL 311.57□□□□□ -0.568e-7■■■□□ 15.5
YBX3P16989 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.42■■□□□ 1.343e-7■■■□□ 15.5
YBX3P16989 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.033e-7■■■□□ 15.5
YBX3P16989 TBPL1-201ENST00000237264 4228 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.883e-7■■■□□ 15.5
YBX3P16989 RPS4X-201ENST00000316084 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.456e-40■■■□□ 15.4
YBX3P16989 RPS4X-204ENST00000486733 1820 ntTSL 59.44□□□□□ -0.96e-40■■■□□ 15.4
YBX3P16989 UTRN-203ENST00000367526 3220 ntTSL 5 BASIC9.76□□□□□ -0.853e-7■■■□□ 15.4
YBX3P16989 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.753e-7■■■□□ 15.4
YBX3P16989 GNB1-206ENST00000471354 1512 ntTSL 519.22■□□□□ 0.676e-10■■■□□ 15.4
YBX3P16989 NSUN2-204ENST00000505264 472 ntTSL 412.69□□□□□ -0.383e-12■■■□□ 15.4
YBX3P16989 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.33e-7■■■□□ 15.4
YBX3P16989 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.79□□□□□ -0.23e-8■■■□□ 15.4
YBX3P16989 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.664e-7■■■□□ 15.4
YBX3P16989 FLOT2-208ENST00000582174 703 ntTSL 325.1■■□□□ 1.613e-8■■■□□ 15.4
YBX3P16989 FLOT2-212ENST00000593158 752 ntTSL 523.31■■□□□ 1.323e-8■■■□□ 15.4
YBX3P16989 FLOT2-207ENST00000581509 426 ntTSL 221.35■■□□□ 1.013e-8■■■□□ 15.4
YBX3P16989 FLOT2-203ENST00000465427 746 ntTSL 515.44■□□□□ 0.063e-8■■■□□ 15.4
YBX3P16989 FLOT2-205ENST00000580313 429 ntTSL 311.31□□□□□ -0.63e-8■■■□□ 15.4
YBX3P16989 MIB2-212ENST00000486072 568 ntTSL 329.14■■■□□ 2.263e-6■■■□□ 15.4
YBX3P16989 MIB2-223ENST00000508148 577 ntTSL 422.82■■□□□ 1.243e-6■■■□□ 15.4
YBX3P16989 MIB2-206ENST00000467597 776 ntTSL 222.37■■□□□ 1.173e-6■■■□□ 15.4
YBX3P16989 BTG1-202ENST00000552315 504 ntTSL 321.99■■□□□ 1.119e-13■■■□□ 15.4
YBX3P16989 MIB2-229ENST00000514234 2562 ntTSL 220.31■□□□□ 0.843e-6■■■□□ 15.4
YBX3P16989 MIB2-222ENST00000507229 2582 ntTSL 219.83■□□□□ 0.763e-6■■■□□ 15.4
YBX3P16989 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.41■□□□□ 0.73e-6■■■□□ 15.4
YBX3P16989 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.18■□□□□ 0.663e-6■■■□□ 15.4
YBX3P16989 MIB2-213ENST00000487053 3252 ntTSL 519.06■□□□□ 0.643e-6■■■□□ 15.4
YBX3P16989 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.543e-6■■■□□ 15.4
YBX3P16989 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.433e-6■■■□□ 15.4
YBX3P16989 MIB2-220ENST00000506488 2997 ntTSL 517.65■□□□□ 0.423e-6■■■□□ 15.4
YBX3P16989 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.373e-6■■■□□ 15.4
YBX3P16989 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.323e-6■■■□□ 15.4
YBX3P16989 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.293e-6■■■□□ 15.4
YBX3P16989 MIB2-214ENST00000489635 3034 ntTSL 216.63■□□□□ 0.253e-6■■■□□ 15.4
YBX3P16989 AIP-204ENST00000529797 801 ntTSL 216.21■□□□□ 0.195e-9■■■□□ 15.4
YBX3P16989 MIB2-210ENST00000479659 4247 ntTSL 216.06■□□□□ 0.163e-6■■■□□ 15.4
YBX3P16989 MIB2-226ENST00000511502 3326 ntTSL 215.63■□□□□ 0.093e-6■■■□□ 15.4
YBX3P16989 BAG4-204ENST00000521311 719 ntTSL 29.54□□□□□ -0.885e-9■■■□□ 15.4
YBX3P16989 ICE2-210ENST00000560668 555 ntTSL 58.5□□□□□ -1.055e-9■■■□□ 15.4
YBX3P16989 SEC24D-212ENST00000511715 2969 ntTSL 25.52□□□□□ -1.539e-13■■■□□ 15.4
YBX3P16989 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.061e-6■■■□□ 15.4
YBX3P16989 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.621e-6■■■□□ 15.4
YBX3P16989 TULP3-205ENST00000540184 978 ntTSL 518.61■□□□□ 0.571e-6■■■□□ 15.4
YBX3P16989 RHNO1-203ENST00000464682 1605 ntTSL 218.31■□□□□ 0.521e-6■■■□□ 15.4
YBX3P16989 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.53■□□□□ 0.41e-6■■■□□ 15.4
YBX3P16989 RHNO1-210ENST00000623153 1008 nt7.66□□□□□ -1.181e-6■■■□□ 15.4
YBX3P16989 MPI-218ENST00000567570 857 ntTSL 226.4■■□□□ 1.823e-6■■■□□ 15.4
YBX3P16989 MPI-204ENST00000561470 851 ntTSL 525.22■■□□□ 1.633e-6■■■□□ 15.4
YBX3P16989 MPI-221ENST00000568840 882 ntTSL 224.63■■□□□ 1.533e-6■■■□□ 15.4
YBX3P16989 MPI-205ENST00000562606 1052 ntTSL 3 BASIC24.03■■□□□ 1.443e-6■■■□□ 15.4
YBX3P16989 MPI-224ENST00000569931 969 ntTSL 323.98■■□□□ 1.433e-6■■■□□ 15.4
Retrieved 100 of 29,075 protein–RNA pairs in 473.8 ms