Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
HOXC4P09017 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXC4P09017 KRT16P1-201ENST00000399124 1418 ntBASIC19.38■□□□□ 0.69
HOXC4P09017 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXC4P09017 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC4P09017 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC4P09017 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HOXC4P09017 NUDT16P1-203ENST00000513809 620 ntBASIC19.38■□□□□ 0.69
HOXC4P09017 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC4P09017 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HOXC4P09017 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC4P09017 AP003071.4-201ENST00000562276 1284 ntBASIC19.38■□□□□ 0.69
HOXC4P09017 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
HOXC4P09017 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.38■□□□□ 0.69
HOXC4P09017 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC4P09017 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC4P09017 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC4P09017 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC4P09017 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC4P09017 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXC4P09017 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC4P09017 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC4P09017 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC4P09017 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC4P09017 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.37■□□□□ 0.69
HOXC4P09017 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
HOXC4P09017 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC4P09017 REXO1L12P-201ENST00000622156 912 ntBASIC19.37■□□□□ 0.69
HOXC4P09017 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXC4P09017 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC4P09017 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC4P09017 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 TMEM179-206ENST00000616017 1645 ntBASIC19.36■□□□□ 0.69
HOXC4P09017 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC4P09017 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 AL512408.1-201ENST00000569378 2000 ntBASIC19.36■□□□□ 0.69
HOXC4P09017 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC4P09017 AC116562.2-201ENST00000507042 360 ntBASIC19.36■□□□□ 0.69
HOXC4P09017 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 AL355075.4-201ENST00000554988 638 ntBASIC19.36■□□□□ 0.69
HOXC4P09017 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC4P09017 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC4P09017 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC4P09017 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC4P09017 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC4P09017 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.35■□□□□ 0.69
HOXC4P09017 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC4P09017 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.35■□□□□ 0.69
HOXC4P09017 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC4P09017 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HOXC4P09017 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXC4P09017 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXC4P09017 CR392000.1-201ENST00000624770 1228 ntBASIC19.35■□□□□ 0.69
HOXC4P09017 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXC4P09017 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HOXC4P09017 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC4P09017 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC4P09017 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC4P09017 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC4P09017 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC4P09017 AC026271.3-201ENST00000571884 352 ntBASIC19.34■□□□□ 0.69
HOXC4P09017 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXC4P09017 AL031985.4-201ENST00000642138 673 ntBASIC19.34■□□□□ 0.69
HOXC4P09017 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 AC009237.14-201ENST00000609975 1594 ntBASIC19.34■□□□□ 0.69
HOXC4P09017 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HOXC4P09017 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC4P09017 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms