Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.27■□□□□ 0.84
TOP3BO95985 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TOP3BO95985 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TOP3BO95985 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TOP3BO95985 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TOP3BO95985 AC087289.5-201ENST00000586076 3175 ntBASIC20.26■□□□□ 0.83
TOP3BO95985 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TOP3BO95985 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.26■□□□□ 0.83
TOP3BO95985 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TOP3BO95985 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.26■□□□□ 0.83
TOP3BO95985 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.26■□□□□ 0.83
TOP3BO95985 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.26■□□□□ 0.83
TOP3BO95985 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TOP3BO95985 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.26■□□□□ 0.83
TOP3BO95985 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TOP3BO95985 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.25■□□□□ 0.83
TOP3BO95985 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
TOP3BO95985 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.25■□□□□ 0.83
TOP3BO95985 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.25■□□□□ 0.83
TOP3BO95985 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.25■□□□□ 0.83
TOP3BO95985 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 KRT16P2-201ENST00000414673 1423 ntBASIC20.25■□□□□ 0.83
TOP3BO95985 RBM17P2-201ENST00000616397 1405 ntBASIC20.25■□□□□ 0.83
TOP3BO95985 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
TOP3BO95985 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TOP3BO95985 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TOP3BO95985 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.24■□□□□ 0.83
TOP3BO95985 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.24■□□□□ 0.83
TOP3BO95985 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
TOP3BO95985 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 KRT17P3-201ENST00000420566 1262 ntBASIC20.24■□□□□ 0.83
TOP3BO95985 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.24■□□□□ 0.83
TOP3BO95985 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.24■□□□□ 0.83
TOP3BO95985 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TOP3BO95985 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.23■□□□□ 0.83
TOP3BO95985 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TOP3BO95985 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 AC087499.1-201ENST00000418141 1075 ntBASIC20.23■□□□□ 0.83
TOP3BO95985 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.23■□□□□ 0.83
TOP3BO95985 AC245052.3-201ENST00000450182 901 ntBASIC20.23■□□□□ 0.83
TOP3BO95985 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 KRT18P35-201ENST00000510488 1269 ntBASIC20.23■□□□□ 0.83
TOP3BO95985 AL162412.1-201ENST00000567129 965 ntBASIC20.23■□□□□ 0.83
TOP3BO95985 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.23■□□□□ 0.83
TOP3BO95985 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TOP3BO95985 AL158211.5-201ENST00000623583 2518 ntBASIC20.23■□□□□ 0.83
TOP3BO95985 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TOP3BO95985 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.22■□□□□ 0.83
TOP3BO95985 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.22■□□□□ 0.83
TOP3BO95985 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.22■□□□□ 0.83
TOP3BO95985 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TOP3BO95985 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
TOP3BO95985 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.22■□□□□ 0.83
TOP3BO95985 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.22■□□□□ 0.83
TOP3BO95985 MIR2861-201ENST00000636310 90 ntBASIC20.22■□□□□ 0.83
TOP3BO95985 HLA-B-256ENST00000639848 1089 ntBASIC20.22■□□□□ 0.83
TOP3BO95985 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TOP3BO95985 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
TOP3BO95985 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms