Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CACNA1FO60840 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC25.06■■□□□ 1.6
CACNA1FO60840 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC25.06■■□□□ 1.6
CACNA1FO60840 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC25.05■■□□□ 1.6
CACNA1FO60840 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
CACNA1FO60840 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC25.05■■□□□ 1.6
CACNA1FO60840 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1FO60840 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
CACNA1FO60840 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 AP006294.2-201ENST00000641667 209 ntBASIC25.04■■□□□ 1.6
CACNA1FO60840 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC25.04■■□□□ 1.6
CACNA1FO60840 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
CACNA1FO60840 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1FO60840 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.04■■□□□ 1.6
CACNA1FO60840 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.03■■□□□ 1.6
CACNA1FO60840 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 LBX2-AS1-202ENST00000603175 2083 ntBASIC25.03■■□□□ 1.6
CACNA1FO60840 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CACNA1FO60840 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
CACNA1FO60840 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC25.03■■□□□ 1.6
CACNA1FO60840 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CACNA1FO60840 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 BAALC-201ENST00000297574 801 ntTSL 3 BASIC25.03■■□□□ 1.6
CACNA1FO60840 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
CACNA1FO60840 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC25.03■■□□□ 1.6
CACNA1FO60840 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
CACNA1FO60840 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1FO60840 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 TUBB8P6-201ENST00000436895 1288 ntBASIC25.02■■□□□ 1.6
CACNA1FO60840 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.02■■□□□ 1.6
CACNA1FO60840 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.02■■□□□ 1.6
CACNA1FO60840 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.02■■□□□ 1.6
CACNA1FO60840 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC25.02■■□□□ 1.6
CACNA1FO60840 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
CACNA1FO60840 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC25.02■■□□□ 1.6
CACNA1FO60840 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.02■■□□□ 1.6
CACNA1FO60840 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC25.02■■□□□ 1.6
CACNA1FO60840 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CACNA1FO60840 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC25.02■■□□□ 1.6
CACNA1FO60840 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC25.01■■□□□ 1.6
CACNA1FO60840 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CACNA1FO60840 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.01■■□□□ 1.59
CACNA1FO60840 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CACNA1FO60840 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.01■■□□□ 1.59
CACNA1FO60840 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.01■■□□□ 1.59
CACNA1FO60840 AC233702.5-201ENST00000584107 538 ntBASIC25.01■■□□□ 1.59
CACNA1FO60840 SPIB-206ENST00000596074 847 ntTSL 2 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms